Manganese in PDB 8j5k: Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana

The structure of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana also contains other interesting chemical elements:

Magnesium	(Mg)	206 atoms
Calcium	(Ca)	2 atoms
Iron	(Fe)	6 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Manganese atom in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana (pdb code 8j5k). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana, PDB code: 8j5k:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:97.5 occ:1.00 MN1 A:OEX401 0.0 97.5 1.0 O1 A:OEX401 1.8 97.5 1.0 O3 A:OEX401 1.8 97.5 1.0 O5 A:OEX401 2.6 97.5 1.0 OD2 A:ASP342 2.6 86.3 1.0 NE2 A:HIS332 2.6 83.6 1.0 MN2 A:OEX401 2.7 97.5 1.0 MN3 A:OEX401 3.3 97.5 1.0 CG A:ASP342 3.4 86.3 1.0 CA1 A:OEX401 3.5 97.5 1.0 OD1 A:ASP342 3.5 86.3 1.0 CD2 A:HIS332 3.6 83.6 1.0 CE1 A:HIS332 3.6 83.6 1.0 O2 A:OEX401 3.6 97.5 1.0 NE2 A:HIS337 4.3 88.5 1.0 ND1 A:HIS332 4.7 83.6 1.0 CB A:ASP342 4.7 86.3 1.0 CG A:HIS332 4.7 83.6 1.0 CB A:GLU189 4.7 67.8 1.0 OE1 C:GLU354 4.8 87.4 1.0 MN4 A:OEX401 4.9 97.5 1.0 OE2 C:GLU354 4.9 87.4 1.0 OE1 A:GLU333 4.9 88.5 1.0 CG1 A:VAL185 4.9 68.0 1.0 CE1 A:HIS337 4.9 88.5 1.0

Manganese binding site 2 out of 8 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:97.5 occ:1.00 MN2 A:OEX401 0.0 97.5 1.0 O1 A:OEX401 2.0 97.5 1.0 O2 A:OEX401 2.1 97.5 1.0 O3 A:OEX401 2.1 97.5 1.0 OD1 A:ASP342 2.5 86.3 1.0 OE1 C:GLU354 2.6 87.4 1.0 MN1 A:OEX401 2.7 97.5 1.0 MN3 A:OEX401 2.9 97.5 1.0 CD C:GLU354 3.2 87.4 1.0 CA1 A:OEX401 3.3 97.5 1.0 CG A:ASP342 3.3 86.3 1.0 OE2 C:GLU354 3.4 87.4 1.0 OD2 A:ASP342 3.5 86.3 1.0 O5 A:OEX401 3.9 97.5 1.0 NE2 A:HIS337 4.3 88.5 1.0 O A:LEU343 4.5 85.6 1.0 CG C:GLU354 4.5 87.4 1.0 O4 A:OEX401 4.5 97.5 1.0 CB A:ASP342 4.7 86.3 1.0 CD2 A:HIS337 4.8 88.5 1.0 OE1 A:GLU333 4.9 88.5 1.0 NE2 A:HIS332 4.9 83.6 1.0 NH2 C:ARG357 5.0 79.1 1.0

Manganese binding site 3 out of 8 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:97.5 occ:1.00 MN3 A:OEX401 0.0 97.5 1.0 O2 A:OEX401 1.9 97.5 1.0 O3 A:OEX401 2.0 97.5 1.0 O4 A:OEX401 2.1 97.5 1.0 O5 A:OEX401 2.4 97.5 1.0 OE1 A:GLU333 2.6 88.5 1.0 OE2 C:GLU354 2.7 87.4 1.0 MN2 A:OEX401 2.9 97.5 1.0 MN4 A:OEX401 2.9 97.5 1.0 OE2 A:GLU333 2.9 88.5 1.0 CD A:GLU333 3.0 88.5 1.0 MN1 A:OEX401 3.3 97.5 1.0 CA1 A:OEX401 3.4 97.5 1.0 O1 A:OEX401 3.6 97.5 1.0 CD C:GLU354 3.6 87.4 1.0 OE1 C:GLU354 3.9 87.4 1.0 OD1 A:ASP170 4.1 77.4 1.0 NH2 C:ARG357 4.2 79.1 1.0 CG A:GLU333 4.4 88.5 1.0 NE2 A:HIS332 4.5 83.6 1.0 NE2 A:HIS337 4.6 88.5 1.0 CD2 A:HIS332 4.7 83.6 1.0 CG C:GLU354 4.8 87.4 1.0 CB A:GLU333 5.0 88.5 1.0 CG A:ASP170 5.0 77.4 1.0

Manganese binding site 4 out of 8 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:97.5 occ:1.00 MN4 A:OEX401 0.0 97.5 1.0 O4 A:OEX401 2.1 97.5 1.0 O5 A:OEX401 2.4 97.5 1.0 OE2 A:GLU333 2.5 88.5 1.0 OD1 A:ASP170 2.5 77.4 1.0 MN3 A:OEX401 2.9 97.5 1.0 CD A:GLU333 3.6 88.5 1.0 CG A:ASP170 3.7 77.4 1.0 CA1 A:OEX401 3.8 97.5 1.0 O2 A:OEX401 3.8 97.5 1.0 OE1 A:GLU333 4.1 88.5 1.0 O3 A:OEX401 4.5 97.5 1.0 OD2 A:ASP170 4.5 77.4 1.0 CA A:ASP170 4.5 77.4 1.0 O A:SER169 4.5 74.5 1.0 CB A:ASP170 4.7 77.4 1.0 CG1 A:VAL185 4.8 68.0 1.0 CG A:GLU333 4.8 88.5 1.0 MN1 A:OEX401 4.9 97.5 1.0 NH2 C:ARG357 5.0 79.1 1.0

Manganese binding site 5 out of 8 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mn401 b:97.5 occ:1.00 MN1 a:OEX401 0.0 97.5 1.0 O1 a:OEX401 1.8 97.5 1.0 O3 a:OEX401 1.8 97.5 1.0 O5 a:OEX401 2.6 97.5 1.0 OD2 a:ASP342 2.6 86.3 1.0 NE2 a:HIS332 2.6 83.6 1.0 MN2 a:OEX401 2.7 97.5 1.0 MN3 a:OEX401 3.3 97.5 1.0 CG a:ASP342 3.4 86.3 1.0 CA1 a:OEX401 3.5 97.5 1.0 OD1 a:ASP342 3.5 86.3 1.0 CD2 a:HIS332 3.6 83.6 1.0 CE1 a:HIS332 3.6 83.6 1.0 O2 a:OEX401 3.6 97.5 1.0 NE2 a:HIS337 4.3 88.5 1.0 ND1 a:HIS332 4.7 83.6 1.0 CB a:ASP342 4.7 86.3 1.0 CG a:HIS332 4.7 83.6 1.0 CB a:GLU189 4.7 67.8 1.0 OE1 c:GLU354 4.8 87.4 1.0 MN4 a:OEX401 4.9 97.5 1.0 OE2 c:GLU354 4.9 87.4 1.0 OE1 a:GLU333 4.9 88.5 1.0 CG1 a:VAL185 4.9 68.0 1.0 CE1 a:HIS337 4.9 88.5 1.0

Manganese binding site 6 out of 8 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mn401 b:97.5 occ:1.00 MN2 a:OEX401 0.0 97.5 1.0 O1 a:OEX401 2.0 97.5 1.0 O2 a:OEX401 2.1 97.5 1.0 O3 a:OEX401 2.1 97.5 1.0 OD1 a:ASP342 2.5 86.3 1.0 OE1 c:GLU354 2.6 87.4 1.0 MN1 a:OEX401 2.7 97.5 1.0 MN3 a:OEX401 2.9 97.5 1.0 CD c:GLU354 3.2 87.4 1.0 CA1 a:OEX401 3.3 97.5 1.0 CG a:ASP342 3.3 86.3 1.0 OE2 c:GLU354 3.4 87.4 1.0 OD2 a:ASP342 3.5 86.3 1.0 O5 a:OEX401 3.9 97.5 1.0 NE2 a:HIS337 4.3 88.5 1.0 O a:LEU343 4.5 85.6 1.0 CG c:GLU354 4.5 87.4 1.0 O4 a:OEX401 4.5 97.5 1.0 CB a:ASP342 4.7 86.3 1.0 CD2 a:HIS337 4.8 88.5 1.0 OE1 a:GLU333 4.9 88.5 1.0 NE2 a:HIS332 4.9 83.6 1.0 NH2 c:ARG357 5.0 79.1 1.0

Manganese binding site 7 out of 8 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mn401 b:97.5 occ:1.00 MN3 a:OEX401 0.0 97.5 1.0 O2 a:OEX401 1.9 97.5 1.0 O3 a:OEX401 2.0 97.5 1.0 O4 a:OEX401 2.1 97.5 1.0 O5 a:OEX401 2.4 97.5 1.0 OE1 a:GLU333 2.6 88.5 1.0 OE2 c:GLU354 2.7 87.4 1.0 MN2 a:OEX401 2.9 97.5 1.0 MN4 a:OEX401 2.9 97.5 1.0 OE2 a:GLU333 2.9 88.5 1.0 CD a:GLU333 3.0 88.5 1.0 MN1 a:OEX401 3.3 97.5 1.0 CA1 a:OEX401 3.4 97.5 1.0 O1 a:OEX401 3.6 97.5 1.0 CD c:GLU354 3.6 87.4 1.0 OE1 c:GLU354 3.9 87.4 1.0 OD1 a:ASP170 4.1 77.4 1.0 NH2 c:ARG357 4.2 79.1 1.0 CG a:GLU333 4.4 88.5 1.0 NE2 a:HIS332 4.5 83.6 1.0 NE2 a:HIS337 4.6 88.5 1.0 CD2 a:HIS332 4.7 83.6 1.0 CG c:GLU354 4.8 87.4 1.0 CB a:GLU333 5.0 88.5 1.0 CG a:ASP170 5.0 77.4 1.0

Manganese binding site 8 out of 8 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mn401 b:97.5 occ:1.00 MN4 a:OEX401 0.0 97.5 1.0 O4 a:OEX401 2.1 97.5 1.0 O5 a:OEX401 2.4 97.5 1.0 OE2 a:GLU333 2.5 88.5 1.0 OD1 a:ASP170 2.5 77.4 1.0 MN3 a:OEX401 2.9 97.5 1.0 CD a:GLU333 3.6 88.5 1.0 CG a:ASP170 3.7 77.4 1.0 CA1 a:OEX401 3.8 97.5 1.0 O2 a:OEX401 3.8 97.5 1.0 OE1 a:GLU333 4.1 88.5 1.0 O3 a:OEX401 4.5 97.5 1.0 OD2 a:ASP170 4.5 77.4 1.0 CA a:ASP170 4.5 77.4 1.0 O a:SER169 4.5 74.5 1.0 CB a:ASP170 4.7 77.4 1.0 CG1 a:VAL185 4.8 68.0 1.0 CG a:GLU333 4.8 88.5 1.0 MN1 a:OEX401 4.9 97.5 1.0 NH2 c:ARG357 5.0 79.1 1.0

S.Zhao, L.Shen, X.Li, Q.Tao, Z.Li, C.Xu, C.Zhou, Y.Yang, M.Sang, G.Han, L.J.Yu, T.Kuang, J.R.Shen, W.Wang. Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana. Nat Commun V. 14 8164 2023.
ISSN: ESSN 2041-1723
PubMed: 38071196
DOI: 10.1038/S41467-023-44055-8