Manganese in PDB 8hl8: Crystal Structrue of Mtdl R257K Mutant

The structure of Crystal Structrue of Mtdl R257K Mutant, PDB code: 8hl8 was solved by F.D.Li, C.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.84 / 2.50
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	98.605, 162.405, 116.206, 90, 90, 90
R / Rfree (%)	25.7 / 29.6

The binding sites of Manganese atom in the Crystal Structrue of Mtdl R257K Mutant (pdb code 8hl8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structrue of Mtdl R257K Mutant, PDB code: 8hl8:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structrue of Mtdl R257K Mutant


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structrue of Mtdl R257K Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:80.4 occ:1.00 OD2 A:ASP111 2.3 61.8 1.0 NE2 A:HIS287 2.4 59.3 1.0 CG A:ASP111 3.3 56.8 1.0 CE1 A:HIS287 3.3 55.5 1.0 CD2 A:HIS287 3.3 59.8 1.0 OD1 A:ASP111 3.6 55.6 1.0 ND1 A:HIS287 4.4 60.0 1.0 CG A:HIS287 4.5 60.8 1.0 CB A:ASP111 4.6 57.0 1.0 OD2 A:ASP109 4.7 52.2 1.0

Manganese binding site 2 out of 2 in the Crystal Structrue of Mtdl R257K Mutant


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structrue of Mtdl R257K Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn401 b:81.2 occ:1.00 OD2 C:ASP111 2.2 51.0 1.0 NE2 C:HIS287 2.4 56.3 1.0 CG C:ASP111 3.1 51.5 1.0 CE1 C:HIS287 3.2 57.5 1.0 OD1 C:ASP111 3.3 49.4 1.0 CD2 C:HIS287 3.3 61.3 1.0 O C:HOH562 3.5 71.1 1.0 O C:HOH501 4.1 60.1 1.0 ND1 C:HIS287 4.3 62.1 1.0 CG C:HIS287 4.4 63.5 1.0 CB C:ASP111 4.5 53.6 1.0 OD2 C:ASP109 4.5 57.8 1.0

X.Du, X.Chu, N.Liu, X.Jia, H.Peng, Y.Xiao, L.Liu, H.Yu, F.Li, C.He. Structures of the Ndp-Pyranose Mutase Belonging to Glycosyltransferase Family 75 Reveal Residues Important For Mn 2+ Coordination and Substrate Binding. J.Biol.Chem. V. 299 02903 2023.
ISSN: ESSN 1083-351X
PubMed: 36642179
DOI: 10.1016/J.JBC.2023.102903