Manganese in PDB 8gn0: Crystal Structure of Dcbq-Bound Photosystem II Complex
Enzymatic activity of Crystal Structure of Dcbq-Bound Photosystem II Complex
All present enzymatic activity of Crystal Structure of Dcbq-Bound Photosystem II Complex:
1.10.3.9;
Protein crystallography data
The structure of Crystal Structure of Dcbq-Bound Photosystem II Complex, PDB code: 8gn0
was solved by
S.Kamada,
Y.Nakajima,
J.-R.Shen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.00 /
2.15
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
121.223,
228.205,
286.997,
90,
90,
90
|
|
R / Rfree (%)
|
15.2 /
18.5
|
Other elements in 8gn0:
The structure of Crystal Structure of Dcbq-Bound Photosystem II Complex also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the Crystal Structure of Dcbq-Bound Photosystem II Complex
(pdb code 8gn0). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the
Crystal Structure of Dcbq-Bound Photosystem II Complex, PDB code: 8gn0:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Manganese binding site 1 out
of 8 in 8gn0
Go back to
Manganese Binding Sites List in 8gn0
Manganese binding site 1 out
of 8 in the Crystal Structure of Dcbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Crystal Structure of Dcbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:43.9
occ:1.00
|
MN1
|
A:OEX401
|
0.0
|
43.9
|
1.0
|
|
OE2
|
A:GLU189
|
1.8
|
45.8
|
1.0
|
|
O1
|
A:OEX401
|
1.8
|
42.0
|
1.0
|
|
O3
|
A:OEX401
|
1.8
|
44.6
|
1.0
|
|
NE2
|
A:HIS332
|
2.1
|
46.4
|
1.0
|
|
OD2
|
A:ASP342
|
2.1
|
44.8
|
1.0
|
|
O5
|
A:OEX401
|
2.6
|
48.7
|
1.0
|
|
MN2
|
A:OEX401
|
2.9
|
46.1
|
1.0
|
|
CD
|
A:GLU189
|
2.9
|
50.9
|
1.0
|
|
CD2
|
A:HIS332
|
3.1
|
40.9
|
1.0
|
|
CE1
|
A:HIS332
|
3.1
|
39.6
|
1.0
|
|
CG
|
A:ASP342
|
3.1
|
44.8
|
1.0
|
|
MN3
|
A:OEX401
|
3.3
|
45.2
|
1.0
|
|
OD1
|
A:ASP342
|
3.4
|
42.7
|
1.0
|
|
OE1
|
A:GLU189
|
3.5
|
54.9
|
1.0
|
|
CA1
|
A:OEX401
|
3.5
|
52.6
|
1.0
|
|
O2
|
A:OEX401
|
3.7
|
51.0
|
1.0
|
|
O
|
A:HOH524
|
3.9
|
62.4
|
1.0
|
|
NE2
|
A:HIS337
|
3.9
|
46.4
|
1.0
|
|
OE1
|
A:GLU333
|
4.0
|
44.2
|
1.0
|
|
CG
|
A:GLU189
|
4.1
|
45.2
|
1.0
|
|
ND1
|
A:HIS332
|
4.2
|
42.9
|
1.0
|
|
CG
|
A:HIS332
|
4.2
|
42.5
|
1.0
|
|
OXT
|
A:ALA344
|
4.4
|
48.2
|
1.0
|
|
CB
|
A:ASP342
|
4.5
|
40.3
|
1.0
|
|
CG1
|
A:VAL185
|
4.5
|
40.0
|
1.0
|
|
OE1
|
C:GLU354
|
4.5
|
49.1
|
1.0
|
|
CE1
|
A:HIS337
|
4.6
|
43.2
|
1.0
|
|
OE2
|
C:GLU354
|
4.7
|
48.0
|
1.0
|
|
CD
|
A:GLU333
|
4.8
|
45.7
|
1.0
|
|
O
|
A:HOH615
|
4.8
|
50.1
|
1.0
|
|
O
|
A:ALA344
|
4.8
|
51.7
|
1.0
|
|
C
|
A:ALA344
|
5.0
|
53.5
|
1.0
|
|
CD2
|
A:HIS337
|
5.0
|
44.2
|
1.0
|
|
Manganese binding site 2 out
of 8 in 8gn0
Go back to
Manganese Binding Sites List in 8gn0
Manganese binding site 2 out
of 8 in the Crystal Structure of Dcbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Crystal Structure of Dcbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:46.1
occ:1.00
|
MN2
|
A:OEX401
|
0.0
|
46.1
|
1.0
|
|
OXT
|
A:ALA344
|
1.9
|
48.2
|
1.0
|
|
O2
|
A:OEX401
|
2.0
|
51.0
|
1.0
|
|
O3
|
A:OEX401
|
2.0
|
44.6
|
1.0
|
|
O1
|
A:OEX401
|
2.0
|
42.0
|
1.0
|
|
OE1
|
C:GLU354
|
2.1
|
49.1
|
1.0
|
|
OD1
|
A:ASP342
|
2.1
|
42.7
|
1.0
|
|
MN3
|
A:OEX401
|
2.8
|
45.2
|
1.0
|
|
MN1
|
A:OEX401
|
2.9
|
43.9
|
1.0
|
|
C
|
A:ALA344
|
2.9
|
53.5
|
1.0
|
|
CD
|
C:GLU354
|
3.0
|
50.6
|
1.0
|
|
CG
|
A:ASP342
|
3.0
|
44.8
|
1.0
|
|
OE2
|
C:GLU354
|
3.2
|
48.0
|
1.0
|
|
O
|
A:ALA344
|
3.2
|
51.7
|
1.0
|
|
OD2
|
A:ASP342
|
3.2
|
44.8
|
1.0
|
|
CA1
|
A:OEX401
|
3.4
|
52.6
|
1.0
|
|
O5
|
A:OEX401
|
3.8
|
48.7
|
1.0
|
|
NE2
|
A:HIS337
|
3.9
|
46.4
|
1.0
|
|
O
|
A:HOH524
|
4.0
|
62.4
|
1.0
|
|
O
|
A:HOH622
|
4.1
|
44.3
|
1.0
|
|
CA
|
A:ALA344
|
4.2
|
52.0
|
1.0
|
|
OE2
|
A:GLU189
|
4.3
|
45.8
|
1.0
|
|
N
|
A:ALA344
|
4.3
|
53.7
|
1.0
|
|
CD2
|
A:HIS337
|
4.3
|
44.2
|
1.0
|
|
CG
|
C:GLU354
|
4.4
|
48.7
|
1.0
|
|
O4
|
A:OEX401
|
4.4
|
47.6
|
1.0
|
|
CB
|
A:ASP342
|
4.4
|
40.3
|
1.0
|
|
OE1
|
A:GLU333
|
4.5
|
44.2
|
1.0
|
|
NH2
|
C:ARG357
|
4.6
|
48.5
|
1.0
|
|
NE2
|
A:HIS332
|
4.6
|
46.4
|
1.0
|
|
CA
|
A:ASP342
|
4.8
|
45.3
|
1.0
|
|
CB
|
C:GLU354
|
4.8
|
40.6
|
1.0
|
|
C
|
A:ASP342
|
4.9
|
44.6
|
1.0
|
|
CD
|
A:GLU189
|
5.0
|
50.9
|
1.0
|
|
OD2
|
A:ASP170
|
5.0
|
51.4
|
1.0
|
|
O
|
A:HOH536
|
5.0
|
56.3
|
1.0
|
|
Manganese binding site 3 out
of 8 in 8gn0
Go back to
Manganese Binding Sites List in 8gn0
Manganese binding site 3 out
of 8 in the Crystal Structure of Dcbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Crystal Structure of Dcbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:45.2
occ:1.00
|
MN3
|
A:OEX401
|
0.0
|
45.2
|
1.0
|
|
O2
|
A:OEX401
|
2.0
|
51.0
|
1.0
|
|
O4
|
A:OEX401
|
2.0
|
47.6
|
1.0
|
|
OE1
|
A:GLU333
|
2.0
|
44.2
|
1.0
|
|
O3
|
A:OEX401
|
2.1
|
44.6
|
1.0
|
|
OE2
|
C:GLU354
|
2.1
|
48.0
|
1.0
|
|
O5
|
A:OEX401
|
2.3
|
48.7
|
1.0
|
|
MN2
|
A:OEX401
|
2.8
|
46.1
|
1.0
|
|
MN4
|
A:OEX401
|
3.0
|
48.5
|
1.0
|
|
CD
|
A:GLU333
|
3.0
|
45.7
|
1.0
|
|
CD
|
C:GLU354
|
3.1
|
50.6
|
1.0
|
|
MN1
|
A:OEX401
|
3.3
|
43.9
|
1.0
|
|
OE2
|
A:GLU333
|
3.3
|
47.1
|
1.0
|
|
OE1
|
C:GLU354
|
3.4
|
49.1
|
1.0
|
|
CA1
|
A:OEX401
|
3.4
|
52.6
|
1.0
|
|
O1
|
A:OEX401
|
3.5
|
42.0
|
1.0
|
|
NH2
|
C:ARG357
|
4.0
|
48.5
|
1.0
|
|
O
|
C:HOH686
|
4.1
|
52.7
|
1.0
|
|
NE2
|
A:HIS337
|
4.1
|
46.4
|
1.0
|
|
OD1
|
A:ASP170
|
4.2
|
47.6
|
1.0
|
|
NE2
|
A:HIS332
|
4.3
|
46.4
|
1.0
|
|
OD2
|
A:ASP170
|
4.4
|
51.4
|
1.0
|
|
CG
|
A:GLU333
|
4.4
|
45.0
|
1.0
|
|
O
|
A:HOH525
|
4.4
|
47.4
|
1.0
|
|
OXT
|
A:ALA344
|
4.4
|
48.2
|
1.0
|
|
CG
|
C:GLU354
|
4.5
|
48.7
|
1.0
|
|
CD2
|
A:HIS332
|
4.5
|
40.9
|
1.0
|
|
OD1
|
A:ASP342
|
4.6
|
42.7
|
1.0
|
|
O
|
A:ALA344
|
4.7
|
51.7
|
1.0
|
|
O
|
A:HOH532
|
4.7
|
48.2
|
1.0
|
|
CB
|
A:GLU333
|
4.7
|
36.9
|
1.0
|
|
CG
|
A:ASP170
|
4.7
|
48.4
|
1.0
|
|
O
|
A:HOH601
|
4.8
|
52.7
|
1.0
|
|
OE2
|
A:GLU189
|
4.8
|
45.8
|
1.0
|
|
OD2
|
A:ASP342
|
4.8
|
44.8
|
1.0
|
|
CE1
|
A:HIS337
|
4.8
|
43.2
|
1.0
|
|
Manganese binding site 4 out
of 8 in 8gn0
Go back to
Manganese Binding Sites List in 8gn0
Manganese binding site 4 out
of 8 in the Crystal Structure of Dcbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Crystal Structure of Dcbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:48.5
occ:1.00
|
MN4
|
A:OEX401
|
0.0
|
48.5
|
1.0
|
|
O4
|
A:OEX401
|
2.1
|
47.6
|
1.0
|
|
OD1
|
A:ASP170
|
2.1
|
47.6
|
1.0
|
|
OE2
|
A:GLU333
|
2.1
|
47.1
|
1.0
|
|
O
|
A:HOH601
|
2.3
|
52.7
|
1.0
|
|
O
|
A:HOH532
|
2.3
|
48.2
|
1.0
|
|
O5
|
A:OEX401
|
2.5
|
48.7
|
1.0
|
|
MN3
|
A:OEX401
|
3.0
|
45.2
|
1.0
|
|
CD
|
A:GLU333
|
3.0
|
45.7
|
1.0
|
|
CG
|
A:ASP170
|
3.2
|
48.4
|
1.0
|
|
OE1
|
A:GLU333
|
3.3
|
44.2
|
1.0
|
|
OD2
|
A:ASP170
|
3.7
|
51.4
|
1.0
|
|
O
|
A:HOH615
|
3.8
|
50.1
|
1.0
|
|
CA1
|
A:OEX401
|
3.8
|
52.6
|
1.0
|
|
O2
|
A:OEX401
|
3.9
|
51.0
|
1.0
|
|
O
|
A:HOH584
|
4.0
|
48.7
|
1.0
|
|
O
|
A:HOH525
|
4.1
|
47.4
|
1.0
|
|
O
|
A:HOH611
|
4.1
|
53.9
|
1.0
|
|
OD1
|
A:ASP61
|
4.2
|
45.2
|
1.0
|
|
O
|
A:SER169
|
4.4
|
42.1
|
1.0
|
|
CG
|
A:GLU333
|
4.4
|
45.0
|
1.0
|
|
CB
|
A:ASP170
|
4.4
|
45.2
|
1.0
|
|
CA
|
A:ASP170
|
4.6
|
42.6
|
1.0
|
|
O3
|
A:OEX401
|
4.7
|
44.6
|
1.0
|
|
O
|
A:HOH534
|
4.7
|
49.6
|
1.0
|
|
OE2
|
C:GLU354
|
4.8
|
48.0
|
1.0
|
|
NH2
|
C:ARG357
|
4.8
|
48.5
|
1.0
|
|
C
|
A:SER169
|
4.9
|
46.5
|
1.0
|
|
Manganese binding site 5 out
of 8 in 8gn0
Go back to
Manganese Binding Sites List in 8gn0
Manganese binding site 5 out
of 8 in the Crystal Structure of Dcbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Crystal Structure of Dcbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn2604
b:46.7
occ:1.00
|
MN1
|
a:OEX2604
|
0.0
|
46.7
|
1.0
|
|
OE2
|
a:GLU189
|
1.8
|
47.4
|
1.0
|
|
O1
|
a:OEX2604
|
1.8
|
41.9
|
1.0
|
|
O3
|
a:OEX2604
|
1.9
|
44.9
|
1.0
|
|
OD2
|
a:ASP342
|
2.1
|
48.8
|
1.0
|
|
NE2
|
a:HIS332
|
2.1
|
44.1
|
1.0
|
|
O5
|
a:OEX2604
|
2.6
|
46.6
|
1.0
|
|
MN2
|
a:OEX2604
|
2.8
|
46.5
|
1.0
|
|
CD
|
a:GLU189
|
2.8
|
51.0
|
1.0
|
|
CE1
|
a:HIS332
|
3.1
|
41.9
|
1.0
|
|
CG
|
a:ASP342
|
3.1
|
49.1
|
1.0
|
|
CD2
|
a:HIS332
|
3.2
|
42.3
|
1.0
|
|
MN3
|
a:OEX2604
|
3.3
|
45.8
|
1.0
|
|
OE1
|
a:GLU189
|
3.3
|
58.2
|
1.0
|
|
CA1
|
a:OEX2604
|
3.4
|
52.7
|
1.0
|
|
OD1
|
a:ASP342
|
3.4
|
48.6
|
1.0
|
|
O2
|
a:OEX2604
|
3.7
|
43.9
|
1.0
|
|
O
|
a:HOH2701
|
3.7
|
66.2
|
1.0
|
|
OE1
|
a:GLU333
|
3.9
|
43.2
|
1.0
|
|
NE2
|
a:HIS337
|
4.0
|
44.8
|
1.0
|
|
CG
|
a:GLU189
|
4.1
|
53.2
|
1.0
|
|
ND1
|
a:HIS332
|
4.2
|
44.0
|
1.0
|
|
CG
|
a:HIS332
|
4.3
|
45.6
|
1.0
|
|
OXT
|
a:ALA344
|
4.4
|
47.5
|
1.0
|
|
OE1
|
c:GLU354
|
4.5
|
51.6
|
1.0
|
|
CB
|
a:ASP342
|
4.5
|
43.3
|
1.0
|
|
CG1
|
a:VAL185
|
4.5
|
45.8
|
1.0
|
|
OE2
|
c:GLU354
|
4.5
|
45.5
|
1.0
|
|
O
|
a:ALA344
|
4.6
|
53.3
|
1.0
|
|
O
|
a:HOH2785
|
4.7
|
50.0
|
1.0
|
|
CE1
|
a:HIS337
|
4.7
|
49.7
|
1.0
|
|
CD
|
a:GLU333
|
4.8
|
47.7
|
1.0
|
|
C
|
a:ALA344
|
4.9
|
52.6
|
1.0
|
|
MN4
|
a:OEX2604
|
4.9
|
49.4
|
1.0
|
|
CD
|
c:GLU354
|
4.9
|
48.9
|
1.0
|
|
O
|
a:HOH2741
|
5.0
|
59.3
|
1.0
|
|
Manganese binding site 6 out
of 8 in 8gn0
Go back to
Manganese Binding Sites List in 8gn0
Manganese binding site 6 out
of 8 in the Crystal Structure of Dcbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Crystal Structure of Dcbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn2604
b:46.5
occ:1.00
|
MN2
|
a:OEX2604
|
0.0
|
46.5
|
1.0
|
|
O2
|
a:OEX2604
|
1.9
|
43.9
|
1.0
|
|
OXT
|
a:ALA344
|
1.9
|
47.5
|
1.0
|
|
O1
|
a:OEX2604
|
2.0
|
41.9
|
1.0
|
|
OE1
|
c:GLU354
|
2.0
|
51.6
|
1.0
|
|
O3
|
a:OEX2604
|
2.1
|
44.9
|
1.0
|
|
OD1
|
a:ASP342
|
2.1
|
48.6
|
1.0
|
|
MN1
|
a:OEX2604
|
2.8
|
46.7
|
1.0
|
|
MN3
|
a:OEX2604
|
2.8
|
45.8
|
1.0
|
|
C
|
a:ALA344
|
2.8
|
52.6
|
1.0
|
|
CD
|
c:GLU354
|
2.9
|
48.9
|
1.0
|
|
CG
|
a:ASP342
|
3.0
|
49.1
|
1.0
|
|
O
|
a:ALA344
|
3.0
|
53.3
|
1.0
|
|
OE2
|
c:GLU354
|
3.1
|
45.5
|
1.0
|
|
OD2
|
a:ASP342
|
3.1
|
48.8
|
1.0
|
|
CA1
|
a:OEX2604
|
3.3
|
52.7
|
1.0
|
|
O5
|
a:OEX2604
|
3.8
|
46.6
|
1.0
|
|
O
|
a:HOH2701
|
3.9
|
66.2
|
1.0
|
|
NE2
|
a:HIS337
|
4.0
|
44.8
|
1.0
|
|
O
|
c:HOH745
|
4.0
|
44.5
|
1.0
|
|
CA
|
a:ALA344
|
4.2
|
52.1
|
1.0
|
|
CG
|
c:GLU354
|
4.3
|
50.4
|
1.0
|
|
N
|
a:ALA344
|
4.3
|
56.0
|
1.0
|
|
OE2
|
a:GLU189
|
4.3
|
47.4
|
1.0
|
|
CD2
|
a:HIS337
|
4.4
|
44.1
|
1.0
|
|
CB
|
a:ASP342
|
4.4
|
43.3
|
1.0
|
|
OE1
|
a:GLU333
|
4.4
|
43.2
|
1.0
|
|
O4
|
a:OEX2604
|
4.5
|
51.5
|
1.0
|
|
NE2
|
a:HIS332
|
4.6
|
44.1
|
1.0
|
|
NH2
|
c:ARG357
|
4.7
|
45.8
|
1.0
|
|
CB
|
c:GLU354
|
4.8
|
52.1
|
1.0
|
|
CA
|
a:ASP342
|
4.8
|
48.1
|
1.0
|
|
O
|
a:HOH2741
|
4.9
|
59.3
|
1.0
|
|
OD2
|
a:ASP170
|
4.9
|
53.1
|
1.0
|
|
CD
|
a:GLU189
|
4.9
|
51.0
|
1.0
|
|
OE1
|
a:GLU189
|
5.0
|
58.2
|
1.0
|
|
C
|
a:ASP342
|
5.0
|
48.4
|
1.0
|
|
Manganese binding site 7 out
of 8 in 8gn0
Go back to
Manganese Binding Sites List in 8gn0
Manganese binding site 7 out
of 8 in the Crystal Structure of Dcbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Crystal Structure of Dcbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn2604
b:45.8
occ:1.00
|
MN3
|
a:OEX2604
|
0.0
|
45.8
|
1.0
|
|
O2
|
a:OEX2604
|
1.9
|
43.9
|
1.0
|
|
O3
|
a:OEX2604
|
2.0
|
44.9
|
1.0
|
|
OE1
|
a:GLU333
|
2.0
|
43.2
|
1.0
|
|
O4
|
a:OEX2604
|
2.1
|
51.5
|
1.0
|
|
OE2
|
c:GLU354
|
2.1
|
45.5
|
1.0
|
|
O5
|
a:OEX2604
|
2.4
|
46.6
|
1.0
|
|
MN2
|
a:OEX2604
|
2.8
|
46.5
|
1.0
|
|
MN4
|
a:OEX2604
|
2.9
|
49.4
|
1.0
|
|
CD
|
a:GLU333
|
3.0
|
47.7
|
1.0
|
|
CD
|
c:GLU354
|
3.1
|
48.9
|
1.0
|
|
OE2
|
a:GLU333
|
3.2
|
47.5
|
1.0
|
|
MN1
|
a:OEX2604
|
3.3
|
46.7
|
1.0
|
|
CA1
|
a:OEX2604
|
3.3
|
52.7
|
1.0
|
|
OE1
|
c:GLU354
|
3.4
|
51.6
|
1.0
|
|
O1
|
a:OEX2604
|
3.6
|
41.9
|
1.0
|
|
NH2
|
c:ARG357
|
4.0
|
45.8
|
1.0
|
|
O
|
c:HOH704
|
4.1
|
62.9
|
1.0
|
|
OD1
|
a:ASP170
|
4.1
|
51.1
|
1.0
|
|
NE2
|
a:HIS332
|
4.2
|
44.1
|
1.0
|
|
OD2
|
a:ASP170
|
4.2
|
53.1
|
1.0
|
|
O
|
a:HOH2705
|
4.3
|
43.1
|
1.0
|
|
NE2
|
a:HIS337
|
4.3
|
44.8
|
1.0
|
|
OXT
|
a:ALA344
|
4.4
|
47.5
|
1.0
|
|
CG
|
a:GLU333
|
4.4
|
43.7
|
1.0
|
|
CG
|
c:GLU354
|
4.5
|
50.4
|
1.0
|
|
CD2
|
a:HIS332
|
4.5
|
42.3
|
1.0
|
|
O
|
a:ALA344
|
4.5
|
53.3
|
1.0
|
|
O
|
a:HOH2751
|
4.6
|
43.4
|
1.0
|
|
CG
|
a:ASP170
|
4.6
|
50.6
|
1.0
|
|
OD1
|
a:ASP342
|
4.7
|
48.6
|
1.0
|
|
O
|
a:HOH2790
|
4.7
|
51.8
|
1.0
|
|
OD2
|
a:ASP342
|
4.7
|
48.8
|
1.0
|
|
CB
|
a:GLU333
|
4.8
|
39.1
|
1.0
|
|
O
|
a:HOH2785
|
4.8
|
50.0
|
1.0
|
|
OE2
|
a:GLU189
|
4.8
|
47.4
|
1.0
|
|
C
|
a:ALA344
|
4.9
|
52.6
|
1.0
|
|
CE1
|
a:HIS337
|
5.0
|
49.7
|
1.0
|
|
Manganese binding site 8 out
of 8 in 8gn0
Go back to
Manganese Binding Sites List in 8gn0
Manganese binding site 8 out
of 8 in the Crystal Structure of Dcbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Crystal Structure of Dcbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn2604
b:49.4
occ:1.00
|
MN4
|
a:OEX2604
|
0.0
|
49.4
|
1.0
|
|
O4
|
a:OEX2604
|
2.0
|
51.5
|
1.0
|
|
OD1
|
a:ASP170
|
2.1
|
51.1
|
1.0
|
|
OE2
|
a:GLU333
|
2.1
|
47.5
|
1.0
|
|
O
|
a:HOH2751
|
2.2
|
43.4
|
1.0
|
|
O
|
a:HOH2790
|
2.2
|
51.8
|
1.0
|
|
O5
|
a:OEX2604
|
2.5
|
46.6
|
1.0
|
|
MN3
|
a:OEX2604
|
2.9
|
45.8
|
1.0
|
|
CD
|
a:GLU333
|
3.1
|
47.7
|
1.0
|
|
CG
|
a:ASP170
|
3.2
|
50.6
|
1.0
|
|
OE1
|
a:GLU333
|
3.3
|
43.2
|
1.0
|
|
OD2
|
a:ASP170
|
3.6
|
53.1
|
1.0
|
|
O
|
a:HOH2785
|
3.7
|
50.0
|
1.0
|
|
CA1
|
a:OEX2604
|
3.8
|
52.7
|
1.0
|
|
O2
|
a:OEX2604
|
3.9
|
43.9
|
1.0
|
|
O
|
a:HOH2705
|
4.0
|
43.1
|
1.0
|
|
O
|
a:HOH2731
|
4.1
|
49.1
|
1.0
|
|
OD1
|
a:ASP61
|
4.2
|
47.0
|
1.0
|
|
O
|
a:HOH2803
|
4.3
|
62.3
|
1.0
|
|
O
|
a:SER169
|
4.4
|
42.2
|
1.0
|
|
CB
|
a:ASP170
|
4.4
|
45.7
|
1.0
|
|
CG
|
a:GLU333
|
4.5
|
43.7
|
1.0
|
|
O3
|
a:OEX2604
|
4.5
|
44.9
|
1.0
|
|
CA
|
a:ASP170
|
4.6
|
46.0
|
1.0
|
|
NH2
|
c:ARG357
|
4.7
|
45.8
|
1.0
|
|
OE2
|
c:GLU354
|
4.7
|
45.5
|
1.0
|
|
O
|
d:HOH535
|
4.8
|
49.7
|
1.0
|
|
MN1
|
a:OEX2604
|
4.9
|
46.7
|
1.0
|
|
C
|
a:SER169
|
5.0
|
42.4
|
1.0
|
|
Reference:
S.Kamada,
Y.Nakajima,
J.R.Shen.
Structural Insights Into the Action Mechanisms of Artificial Electron Acceptors in Photosystem II. J.Biol.Chem. V. 299 04839 2023.
ISSN: ESSN 1083-351X
PubMed: 37209822
DOI: 10.1016/J.JBC.2023.104839
Page generated: Sun Oct 6 12:25:07 2024
|
