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Manganese in PDB 8git: Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+

Enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+

All present enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+:
2.7.7.86;

Protein crystallography data

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+, PDB code: 8git was solved by S.Wu, J.Sohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.77 / 2.72
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.6, 98.209, 142.528, 90, 90, 90
R / Rfree (%) 18.5 / 23

Other elements in 8git:

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+ also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+ (pdb code 8git). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+, PDB code: 8git:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 8git

Go back to Manganese Binding Sites List in 8git
Manganese binding site 1 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn603

b:58.7
occ:1.00
 OD2 A:ASP307 2.1 54.5 1.0
OE2 A:GLU211 2.2 44.4 1.0
O2A A:ATP601 2.2 43.5 1.0
OD1 A:ASP213 2.3 47.5 1.0
PA A:ATP601 3.3 39.5 1.0
CD A:GLU211 3.3 45.3 1.0
CG A:ASP307 3.3 50.3 1.0
CG A:ASP213 3.4 44.3 1.0
O1A A:ATP601 3.7 46.9 1.0
MN A:MN604 3.8 54.2 1.0
OE1 A:GLU211 3.8 45.9 1.0
OD2 A:ASP213 3.8 44.5 1.0
O5' A:ATP601 3.9 41.6 1.0
CB A:ASP307 4.1 47.4 1.0
OD1 A:ASP307 4.2 49.5 1.0
C5' A:ATP601 4.2 41.5 1.0
CG A:GLU211 4.5 43.1 1.0
O3A A:ATP601 4.6 42.5 1.0
CB A:ASP213 4.6 41.4 1.0
O3G A:ATP601 4.8 45.4 1.0

Manganese binding site 2 out of 4 in 8git

Go back to Manganese Binding Sites List in 8git
Manganese binding site 2 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn604

b:54.2
occ:1.00
 O3G A:ATP601 2.2 45.4 1.0
OE1 A:GLU211 2.2 45.9 1.0
OD2 A:ASP213 2.2 44.5 1.0
O2A A:ATP601 2.3 43.5 1.0
O A:HOH703 2.3 41.4 1.0
O2B A:ATP601 2.4 40.1 1.0
CD A:GLU211 3.1 45.3 1.0
CG A:ASP213 3.2 44.3 1.0
PB A:ATP601 3.2 42.5 1.0
O3A A:ATP601 3.2 42.5 1.0
O3B A:ATP601 3.4 37.3 1.0
PA A:ATP601 3.4 39.5 1.0
PG A:ATP601 3.4 42.1 1.0
OD1 A:ASP213 3.4 47.5 1.0
OE2 A:GLU211 3.4 44.4 1.0
MN A:MN603 3.8 58.7 1.0
OG A:SER199 3.9 41.3 1.0
O2G A:ATP601 4.1 40.5 1.0
O A:HOH710 4.1 35.5 1.0
N A:SER199 4.1 41.6 1.0
C5' A:ATP601 4.2 41.5 1.0
O5' A:ATP601 4.3 41.6 1.0
O A:GLU211 4.3 43.5 1.0
CG A:GLU211 4.5 43.1 1.0
CB A:ASP213 4.5 41.4 1.0
O1G A:ATP601 4.6 47.0 1.0
O1B A:ATP601 4.6 44.4 1.0
O1A A:ATP601 4.6 46.9 1.0
CB A:SER199 4.7 39.7 1.0
CA A:GLY198 4.7 40.6 1.0
CB A:GLU211 4.7 43.3 1.0
C A:GLU211 4.8 41.7 1.0
C A:GLY198 4.9 41.2 1.0
N A:ASP213 5.0 40.5 1.0
CA A:SER199 5.0 39.7 1.0

Manganese binding site 3 out of 4 in 8git

Go back to Manganese Binding Sites List in 8git
Manganese binding site 3 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn603

b:61.9
occ:1.00
 O C:HOH716 2.2 45.6 1.0
OD1 C:ASP213 2.3 53.2 1.0
OE2 C:GLU211 2.3 53.1 1.0
O2A C:ATP601 2.4 50.3 1.0
OD2 C:ASP307 2.5 55.3 1.0
CD C:GLU211 3.2 53.5 1.0
CG C:ASP213 3.2 52.8 1.0
PA C:ATP601 3.4 42.2 1.0
CG C:ASP307 3.4 52.9 1.0
OD2 C:ASP213 3.5 51.5 1.0
OE1 C:GLU211 3.5 54.3 1.0
O1A C:ATP601 3.6 50.0 1.0
CB C:ASP307 4.0 52.5 1.0
O5' C:ATP601 4.0 45.7 1.0
MN C:MN604 4.2 65.0 1.0
C5' C:ATP601 4.2 47.4 1.0
OD1 C:ASP307 4.4 55.6 1.0
CG C:GLU211 4.6 46.6 1.0
CB C:ASP213 4.6 49.2 1.0
O3A C:ATP601 4.7 51.1 1.0
O3G C:ATP601 4.9 49.8 1.0

Manganese binding site 4 out of 4 in 8git

Go back to Manganese Binding Sites List in 8git
Manganese binding site 4 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn604

b:65.0
occ:1.00
 OE1 C:GLU211 2.2 54.3 1.0
OD2 C:ASP213 2.4 51.5 1.0
O2B C:ATP601 2.4 49.8 1.0
O3G C:ATP601 2.4 49.8 1.0
O2A C:ATP601 2.6 50.3 1.0
CD C:GLU211 3.4 53.5 1.0
OG C:SER199 3.4 46.8 1.0
PB C:ATP601 3.4 45.8 1.0
O3B C:ATP601 3.5 45.7 1.0
CG C:ASP213 3.5 52.8 1.0
PG C:ATP601 3.5 43.9 1.0
O3A C:ATP601 3.6 51.1 1.0
PA C:ATP601 3.8 42.2 1.0
O C:HOH706 3.9 45.3 1.0
N C:SER199 3.9 47.0 1.0
O C:GLU211 3.9 50.7 1.0
OE2 C:GLU211 4.0 53.1 1.0
OD1 C:ASP213 4.0 53.2 1.0
O2G C:ATP601 4.1 43.6 1.0
MN C:MN603 4.2 61.9 1.0
CB C:SER199 4.3 44.0 1.0
C C:GLU211 4.4 50.0 1.0
C5' C:ATP601 4.5 47.4 1.0
CB C:GLU211 4.5 48.5 1.0
CG C:GLU211 4.6 46.6 1.0
CA C:GLY198 4.6 45.8 1.0
O5' C:ATP601 4.7 45.7 1.0
CB C:ASP213 4.7 49.2 1.0
CA C:SER199 4.7 45.7 1.0
C C:GLY198 4.7 46.4 1.0
O1G C:ATP601 4.8 50.5 1.0
O1B C:ATP601 4.8 47.8 1.0
N C:PHE212 4.9 49.1 1.0
N C:ASP213 4.9 50.2 1.0
C C:PHE212 4.9 50.6 1.0
O1A C:ATP601 5.0 50.0 1.0

Reference:

S.Wu, J.Sohn. Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 1MM MN2+ To Be Published.
Page generated: Sun Oct 6 12:24:35 2024

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