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Manganese in PDB 8gis: Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+

Enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+

All present enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+:
2.7.7.86;

Protein crystallography data

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+, PDB code: 8gis was solved by S.Wu, J.Sohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.54 / 2.46
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.056, 98.218, 142.465, 90, 90, 90
R / Rfree (%) 19.2 / 23

Other elements in 8gis:

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+ also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+ (pdb code 8gis). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+, PDB code: 8gis:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 8gis

Go back to Manganese Binding Sites List in 8gis
Manganese binding site 1 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn603

b:61.6
occ:1.00
 OE2 A:GLU211 2.2 42.1 1.0
OD1 A:ASP213 2.2 43.2 1.0
OD2 A:ASP307 2.3 48.2 1.0
O2A A:ATP601 2.3 41.6 1.0
CG A:ASP213 3.2 43.3 1.0
CD A:GLU211 3.2 43.3 1.0
PA A:ATP601 3.4 38.6 1.0
CG A:ASP307 3.4 48.9 1.0
O1A A:ATP601 3.6 42.8 1.0
OD2 A:ASP213 3.6 41.4 1.0
OE1 A:GLU211 3.6 43.3 1.0
MN A:MN604 3.7 57.4 1.0
O5' A:ATP601 3.9 39.3 1.0
CB A:ASP307 4.0 45.5 1.0
C5' A:ATP601 4.2 38.1 1.0
OD1 A:ASP307 4.5 50.8 1.0
CB A:ASP213 4.5 43.2 1.0
CG A:GLU211 4.5 44.1 1.0
O3A A:ATP601 4.7 40.4 1.0
O3G A:ATP601 4.9 41.9 1.0

Manganese binding site 2 out of 4 in 8gis

Go back to Manganese Binding Sites List in 8gis
Manganese binding site 2 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn604

b:57.4
occ:1.00
 OE1 A:GLU211 2.1 43.3 1.0
OD2 A:ASP213 2.2 41.4 1.0
O3G A:ATP601 2.2 41.9 1.0
O2A A:ATP601 2.3 41.6 1.0
O A:HOH711 2.4 42.0 1.0
O2B A:ATP601 2.4 35.9 1.0
CD A:GLU211 3.1 43.3 1.0
CG A:ASP213 3.2 43.3 1.0
PB A:ATP601 3.4 38.8 1.0
OE2 A:GLU211 3.5 42.1 1.0
PG A:ATP601 3.5 38.2 1.0
PA A:ATP601 3.5 38.6 1.0
O3A A:ATP601 3.5 40.4 1.0
OD1 A:ASP213 3.5 43.2 1.0
O3B A:ATP601 3.6 39.5 1.0
MN A:MN603 3.7 61.6 1.0
OG A:SER199 3.9 39.6 1.0
O A:HOH707 4.1 39.5 1.0
O2G A:ATP601 4.2 36.6 1.0
N A:SER199 4.3 38.4 1.0
C5' A:ATP601 4.3 38.1 1.0
O A:GLU211 4.3 40.9 1.0
CG A:GLU211 4.4 44.1 1.0
O5' A:ATP601 4.4 39.3 1.0
CB A:ASP213 4.5 43.2 1.0
O1G A:ATP601 4.5 40.2 1.0
CB A:GLU211 4.6 41.3 1.0
O1A A:ATP601 4.6 42.8 1.0
C A:GLU211 4.7 42.4 1.0
O1B A:ATP601 4.8 43.6 1.0
CB A:SER199 4.8 39.0 1.0
CA A:GLY198 4.8 40.2 1.0
N A:ASP213 4.8 40.6 1.0

Manganese binding site 3 out of 4 in 8gis

Go back to Manganese Binding Sites List in 8gis
Manganese binding site 3 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn603

b:62.9
occ:1.00
 OE1 C:GLU211 2.2 49.0 1.0
OD1 C:ASP213 2.3 48.8 1.0
OD2 C:ASP307 2.4 51.5 1.0
O C:HOH717 2.4 44.8 1.0
O2A C:ATP601 2.5 48.4 1.0
CG C:ASP213 3.3 48.0 1.0
CD C:GLU211 3.3 51.1 1.0
CG C:ASP307 3.4 52.9 1.0
PA C:ATP601 3.5 42.7 1.0
OD2 C:ASP213 3.6 47.9 1.0
OE2 C:GLU211 3.7 52.4 1.0
O1A C:ATP601 3.7 46.4 1.0
CB C:ASP307 4.0 51.7 1.0
O5' C:ATP601 4.0 45.5 1.0
MN C:MN604 4.2 62.1 1.0
C5' C:ATP601 4.2 43.1 1.0
OD1 C:ASP307 4.4 56.9 1.0
CG C:GLU211 4.6 47.2 1.0
CB C:ASP213 4.6 48.7 1.0
O3A C:ATP601 4.8 46.9 1.0
O3G C:ATP601 4.9 46.9 1.0
O C:PHE212 5.0 50.4 1.0

Manganese binding site 4 out of 4 in 8gis

Go back to Manganese Binding Sites List in 8gis
Manganese binding site 4 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn604

b:62.1
occ:1.00
 OE2 C:GLU211 2.1 52.4 1.0
O3G C:ATP601 2.3 46.9 1.0
OD2 C:ASP213 2.3 47.9 1.0
O2B C:ATP601 2.4 45.2 1.0
O2A C:ATP601 2.6 48.4 1.0
CD C:GLU211 3.2 51.1 1.0
PB C:ATP601 3.4 42.6 1.0
CG C:ASP213 3.4 48.0 1.0
PG C:ATP601 3.5 40.4 1.0
O3B C:ATP601 3.5 43.1 1.0
OE1 C:GLU211 3.6 49.0 1.0
O3A C:ATP601 3.7 46.9 1.0
OG C:SER199 3.8 43.9 1.0
PA C:ATP601 3.8 42.7 1.0
OD1 C:ASP213 3.9 48.8 1.0
O2G C:ATP601 4.0 42.3 1.0
O C:GLU211 4.1 47.8 1.0
N C:SER199 4.1 42.8 1.0
MN C:MN603 4.2 62.9 1.0
O C:HOH703 4.2 42.8 1.0
CG C:GLU211 4.4 47.2 1.0
C C:GLU211 4.5 49.2 1.0
CB C:GLU211 4.5 47.4 1.0
C5' C:ATP601 4.5 43.1 1.0
CB C:SER199 4.6 42.0 1.0
CB C:ASP213 4.6 48.7 1.0
O5' C:ATP601 4.7 45.5 1.0
O1G C:ATP601 4.7 46.7 1.0
O1B C:ATP601 4.8 47.8 1.0
CA C:GLY198 4.8 43.8 1.0
N C:PHE212 4.9 48.3 1.0
CA C:SER199 4.9 42.5 1.0
C C:GLY198 4.9 43.5 1.0
N C:ASP213 4.9 47.0 1.0
O1A C:ATP601 4.9 46.4 1.0
C C:PHE212 5.0 47.7 1.0

Reference:

S.Wu, J.Sohn. Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.5MM MN2+ To Be Published.
Page generated: Sun Oct 6 12:24:03 2024

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