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Manganese in PDB 8gir: Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+

Enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+

All present enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+:
2.7.7.86;

Protein crystallography data

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+, PDB code: 8gir was solved by S.Wu, J.Sohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.79 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.545, 98.506, 142.009, 90, 90, 90
R / Rfree (%) 19.1 / 22.9

Other elements in 8gir:

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+ also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+ (pdb code 8gir). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+, PDB code: 8gir:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 8gir

Go back to Manganese Binding Sites List in 8gir
Manganese binding site 1 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn603

b:61.5
occ:1.00
 O3G A:ATP601 2.1 43.0 1.0
O2A A:ATP601 2.3 42.0 1.0
OE1 A:GLU211 2.3 40.7 1.0
O2B A:ATP601 2.3 36.8 1.0
OD2 A:ASP213 2.4 41.5 1.0
PB A:ATP601 3.3 38.1 1.0
CG A:ASP213 3.3 42.0 1.0
PG A:ATP601 3.3 35.6 1.0
CD A:GLU211 3.3 43.9 1.0
O3B A:ATP601 3.4 38.0 1.0
O3A A:ATP601 3.5 39.7 1.0
PA A:ATP601 3.5 35.5 1.0
OD1 A:ASP213 3.5 45.1 1.0
OG A:SER199 3.7 41.8 1.0
O2G A:ATP601 3.8 36.3 1.0
OE2 A:GLU211 3.8 44.1 1.0
MN A:MN604 4.0 61.5 1.0
O A:HOH721 4.0 35.7 1.0
N A:SER199 4.1 37.3 1.0
O A:GLU211 4.1 43.3 1.0
C5' A:ATP601 4.4 37.5 1.0
O5' A:ATP601 4.4 35.1 1.0
CG A:GLU211 4.5 43.6 1.0
O1G A:ATP601 4.5 42.9 1.0
CB A:SER199 4.6 38.0 1.0
CB A:GLU211 4.6 41.6 1.0
C A:GLU211 4.6 42.2 1.0
CB A:ASP213 4.6 39.5 1.0
O1B A:ATP601 4.7 39.6 1.0
O1A A:ATP601 4.7 40.1 1.0
CA A:GLY198 4.8 37.9 1.0
C A:GLY198 4.9 39.1 1.0
CA A:SER199 5.0 37.0 1.0
N A:ASP213 5.0 37.2 1.0

Manganese binding site 2 out of 4 in 8gir

Go back to Manganese Binding Sites List in 8gir
Manganese binding site 2 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn604

b:61.5
occ:1.00
 OD2 A:ASP307 2.2 46.4 1.0
O A:HOH720 2.3 42.2 1.0
OE2 A:GLU211 2.4 44.1 1.0
OD1 A:ASP213 2.4 45.1 1.0
O2A A:ATP601 2.4 42.0 1.0
PA A:ATP601 3.3 35.5 1.0
CG A:ASP307 3.3 46.9 1.0
CD A:GLU211 3.3 43.9 1.0
CG A:ASP213 3.4 42.0 1.0
OE1 A:GLU211 3.6 40.7 1.0
O1A A:ATP601 3.7 40.1 1.0
O5' A:ATP601 3.7 35.1 1.0
OD2 A:ASP213 3.9 41.5 1.0
MN A:MN603 4.0 61.5 1.0
O A:HOH712 4.0 48.2 1.0
CB A:ASP307 4.1 44.7 1.0
OD1 A:ASP307 4.2 47.0 1.0
C5' A:ATP601 4.2 37.5 1.0
CB A:ASP213 4.6 39.5 1.0
CG A:GLU211 4.7 43.6 1.0
O3A A:ATP601 4.7 39.7 1.0
O3G A:ATP601 4.7 43.0 1.0

Manganese binding site 3 out of 4 in 8gir

Go back to Manganese Binding Sites List in 8gir
Manganese binding site 3 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn603

b:63.1
occ:1.00
 OE1 C:GLU211 2.2 48.1 1.0
OD2 C:ASP213 2.2 44.8 1.0
O2A C:ATP601 2.2 47.7 1.0
O3G C:ATP601 2.3 45.4 1.0
O2B C:ATP601 2.3 43.2 1.0
O C:HOH702 2.3 40.4 1.0
PB C:ATP601 3.2 40.5 1.0
CD C:GLU211 3.3 49.3 1.0
O3A C:ATP601 3.3 46.4 1.0
CG C:ASP213 3.3 46.1 1.0
PA C:ATP601 3.3 43.2 1.0
O3B C:ATP601 3.4 41.5 1.0
PG C:ATP601 3.4 40.5 1.0
OD1 C:ASP213 3.7 48.2 1.0
OE2 C:GLU211 3.7 49.4 1.0
OG C:SER199 3.7 43.3 1.0
MN C:MN604 3.8 65.5 1.0
O2G C:ATP601 4.0 38.8 1.0
O C:HOH708 4.2 40.3 1.0
C5' C:ATP601 4.3 43.8 1.0
N C:SER199 4.3 40.5 1.0
O5' C:ATP601 4.3 43.8 1.0
O1A C:ATP601 4.5 44.7 1.0
O C:GLU211 4.5 42.8 1.0
CG C:GLU211 4.5 45.7 1.0
O1B C:ATP601 4.5 43.8 1.0
CB C:ASP213 4.6 43.8 1.0
O1G C:ATP601 4.6 45.3 1.0
CB C:SER199 4.6 38.9 1.0
CB C:GLU211 4.7 44.2 1.0
C C:GLU211 4.7 45.2 1.0
CA C:GLY198 5.0 41.0 1.0

Manganese binding site 4 out of 4 in 8gir

Go back to Manganese Binding Sites List in 8gir
Manganese binding site 4 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn604

b:65.5
occ:1.00
 OD2 C:ASP307 2.1 47.7 1.0
OE2 C:GLU211 2.2 49.4 1.0
OD1 C:ASP213 2.2 48.2 1.0
O C:HOH724 2.3 42.1 1.0
O2A C:ATP601 2.5 47.7 1.0
CD C:GLU211 3.2 49.3 1.0
CG C:ASP213 3.3 46.1 1.0
CG C:ASP307 3.3 49.3 1.0
PA C:ATP601 3.5 43.2 1.0
OE1 C:GLU211 3.6 48.1 1.0
OD2 C:ASP213 3.6 44.8 1.0
O1A C:ATP601 3.7 44.7 1.0
MN C:MN603 3.8 63.1 1.0
CB C:ASP307 4.0 45.9 1.0
O5' C:ATP601 4.1 43.8 1.0
OD1 C:ASP307 4.2 50.9 1.0
C5' C:ATP601 4.3 43.8 1.0
CG C:GLU211 4.6 45.7 1.0
CB C:ASP213 4.6 43.8 1.0
O3A C:ATP601 4.8 46.4 1.0
O3G C:ATP601 4.9 45.4 1.0

Reference:

S.Wu, J.Sohn. Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.2MM MN2+ To Be Published.
Page generated: Sun Oct 6 12:23:57 2024

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