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Manganese in PDB 8gio: Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+

Enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+

All present enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+:
2.7.7.86;

Protein crystallography data

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+, PDB code: 8gio was solved by S.Wu, J.Sohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.80 / 2.67
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.594, 98.624, 141.929, 90, 90, 90
R / Rfree (%) 18.3 / 24.1

Other elements in 8gio:

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+ also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+ (pdb code 8gio). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+, PDB code: 8gio:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 8gio

Go back to Manganese Binding Sites List in 8gio
Manganese binding site 1 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn603

b:68.3
occ:1.00
 O3G A:ATP601 2.2 49.5 1.0
OE1 A:GLU211 2.3 48.9 1.0
O2B A:ATP601 2.4 44.3 1.0
OD2 A:ASP213 2.6 45.5 1.0
O2A A:ATP601 2.6 49.9 1.0
OG A:SER199 3.3 45.7 1.0
PG A:ATP601 3.3 42.1 1.0
O3B A:ATP601 3.4 42.2 1.0
PB A:ATP601 3.4 42.4 1.0
CD A:GLU211 3.5 49.9 1.0
CG A:ASP213 3.5 47.4 1.0
O2G A:ATP601 3.7 45.9 1.0
O A:HOH711 3.7 42.0 1.0
O3A A:ATP601 3.7 48.7 1.0
O A:GLU211 3.7 48.6 1.0
PA A:ATP601 3.8 41.1 1.0
OD1 A:ASP213 3.8 50.6 1.0
N A:SER199 3.9 40.9 1.0
OE2 A:GLU211 4.1 55.7 1.0
CB A:SER199 4.2 40.9 1.0
MN A:MN604 4.3 76.3 1.0
C A:GLU211 4.5 47.3 1.0
O1G A:ATP601 4.6 48.8 1.0
CB A:GLU211 4.6 46.8 1.0
CG A:GLU211 4.6 48.9 1.0
CA A:SER199 4.6 40.6 1.0
C5' A:ATP601 4.7 43.2 1.0
CA A:GLY198 4.7 43.0 1.0
C A:GLY198 4.7 42.1 1.0
O1B A:ATP601 4.8 46.9 1.0
O5' A:ATP601 4.8 40.2 1.0
CB A:ASP213 4.9 44.8 1.0
O1A A:ATP601 4.9 44.6 1.0
CD A:LYS205 5.0 43.7 1.0
N A:ASP213 5.0 41.9 1.0
N A:TYR200 5.0 41.1 1.0

Manganese binding site 2 out of 4 in 8gio

Go back to Manganese Binding Sites List in 8gio
Manganese binding site 2 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn604

b:76.3
occ:1.00
 OD2 A:ASP307 2.3 59.4 1.0
OE2 A:GLU211 2.4 55.7 1.0
OD1 A:ASP213 2.5 50.6 1.0
O2A A:ATP601 2.5 49.9 1.0
PA A:ATP601 3.3 41.1 1.0
CD A:GLU211 3.4 49.9 1.0
O1A A:ATP601 3.4 44.6 1.0
CG A:ASP307 3.5 55.2 1.0
CG A:ASP213 3.5 47.4 1.0
OE1 A:GLU211 3.6 48.9 1.0
O5' A:ATP601 3.8 40.2 1.0
OD2 A:ASP213 4.0 45.5 1.0
CB A:ASP307 4.2 49.4 1.0
C5' A:ATP601 4.2 43.2 1.0
MN A:MN603 4.3 68.3 1.0
OD1 A:ASP307 4.4 62.5 1.0
O3G A:ATP601 4.7 49.5 1.0
O3A A:ATP601 4.7 48.7 1.0
CG A:GLU211 4.7 48.9 1.0
CB A:ASP213 4.7 44.8 1.0

Manganese binding site 3 out of 4 in 8gio

Go back to Manganese Binding Sites List in 8gio
Manganese binding site 3 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn603

b:72.4
occ:1.00
 OD2 C:ASP213 2.3 51.7 1.0
O2B C:ATP601 2.3 51.0 1.0
OE1 C:GLU211 2.4 55.0 1.0
O3G C:ATP601 2.4 55.3 1.0
O2A C:ATP601 2.6 55.6 1.0
PB C:ATP601 3.3 44.0 1.0
OG C:SER199 3.4 48.8 1.0
CG C:ASP213 3.4 52.5 1.0
O3B C:ATP601 3.5 44.3 1.0
PG C:ATP601 3.5 45.0 1.0
CD C:GLU211 3.6 56.3 1.0
O C:HOH703 3.6 45.8 1.0
O3A C:ATP601 3.7 51.1 1.0
N C:SER199 3.8 46.2 1.0
OD1 C:ASP213 3.8 56.4 1.0
PA C:ATP601 3.8 47.4 1.0
O C:GLU211 3.9 51.8 1.0
O2G C:ATP601 4.0 46.0 1.0
MN C:MN604 4.3 79.9 1.0
OE2 C:GLU211 4.3 60.7 1.0
CB C:SER199 4.3 42.9 1.0
C C:GLU211 4.4 50.6 1.0
C5' C:ATP601 4.5 48.5 1.0
CB C:GLU211 4.5 48.5 1.0
CA C:GLY198 4.6 44.5 1.0
C C:GLY198 4.6 45.2 1.0
CB C:ASP213 4.6 51.0 1.0
CA C:SER199 4.6 45.9 1.0
O5' C:ATP601 4.7 47.9 1.0
CG C:GLU211 4.7 51.5 1.0
O1B C:ATP601 4.7 52.2 1.0
O1G C:ATP601 4.8 51.7 1.0
N C:ASP213 4.9 48.4 1.0
N C:TYR200 4.9 42.0 1.0
N C:PHE212 4.9 49.4 1.0
O1A C:ATP601 5.0 50.6 1.0

Manganese binding site 4 out of 4 in 8gio

Go back to Manganese Binding Sites List in 8gio
Manganese binding site 4 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn604

b:79.9
occ:1.00
 OD2 C:ASP307 2.3 59.2 1.0
OD1 C:ASP213 2.3 56.4 1.0
OE2 C:GLU211 2.4 60.7 1.0
O2A C:ATP601 2.4 55.6 1.0
CD C:GLU211 3.3 56.3 1.0
PA C:ATP601 3.4 47.4 1.0
CG C:ASP213 3.4 52.5 1.0
OE1 C:GLU211 3.4 55.0 1.0
CG C:ASP307 3.4 56.6 1.0
O1A C:ATP601 3.5 50.6 1.0
OD2 C:ASP213 3.8 51.7 1.0
O5' C:ATP601 4.0 47.9 1.0
CB C:ASP307 4.1 50.4 1.0
C5' C:ATP601 4.2 48.5 1.0
MN C:MN603 4.3 72.4 1.0
OD1 C:ASP307 4.4 59.5 1.0
CG C:GLU211 4.7 51.5 1.0
CB C:ASP213 4.7 51.0 1.0
O3A C:ATP601 4.7 51.1 1.0
O3G C:ATP601 4.9 55.3 1.0

Reference:

S.Wu, J.Sohn. Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.1MM MN2+ To Be Published.
Page generated: Sun Oct 6 12:23:35 2024

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