Manganese in PDB 8e6l: X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter D296A Mutant in An Inward-Open, Manganese-Bound State

The structure of X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter D296A Mutant in An Inward-Open, Manganese-Bound State, PDB code: 8e6l was solved by S.Ray, R.Gaudet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.32 / 3.12
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.514, 71.64, 98.895, 90, 90, 90
R / Rfree (%)	21.9 / 27.3

The structure of X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter D296A Mutant in An Inward-Open, Manganese-Bound State also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Manganese atom in the X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter D296A Mutant in An Inward-Open, Manganese-Bound State (pdb code 8e6l). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter D296A Mutant in An Inward-Open, Manganese-Bound State, PDB code: 8e6l:

Manganese binding site 1 out of 1 in the X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter D296A Mutant in An Inward-Open, Manganese-Bound State


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter D296A Mutant in An Inward-Open, Manganese-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:56.5 occ:1.00 O A:ALA227 2.2 48.7 1.0 O A:HOH608 2.3 40.0 1.0 OD1 A:ASN59 2.4 48.3 1.0 SD A:MET230 2.7 54.9 1.0 OD1 A:ASP56 2.7 51.6 1.0 OD2 A:ASP56 3.0 62.5 1.0 CG A:ASP56 3.2 55.7 1.0 CG A:MET230 3.3 52.9 1.0 C A:ALA227 3.4 44.9 1.0 O A:TYR54 3.5 73.4 1.0 CG A:ASN59 3.6 47.6 1.0 CE A:MET230 3.7 60.4 1.0 CA A:ALA227 4.0 40.4 1.0 ND2 A:ASN59 4.3 43.6 1.0 CB A:ALA227 4.5 41.7 1.0 N A:THR228 4.5 40.3 1.0 CB A:ASP56 4.5 53.4 1.0 OE1 A:GLN378 4.6 41.4 1.0 C A:TYR54 4.7 77.3 1.0 CB A:ASN59 4.8 45.1 1.0 CA A:THR228 4.8 44.9 1.0 CB A:MET230 4.8 52.4 1.0 N A:ASP56 4.8 59.7 1.0 N A:ASN59 4.9 49.1 1.0

S.Ray, S.P.Berry, E.A.Wilson, C.H.Zhang, M.Shekhar, A.Singharoy, R.Gaudet. High-Resolution Structures with Bound Mn 2+ and Cd 2+ Map the Metal Import Pathway in An Nramp Transporter. Elife V. 12 2023.
ISSN: ESSN 2050-084X
PubMed: 37039477
DOI: 10.7554/ELIFE.84006