Manganese in PDB 8d3z: Crystal Structure of GALS1 in Complex with Manganese From Populus Trichocarpas

The structure of Crystal Structure of GALS1 in Complex with Manganese From Populus Trichocarpas, PDB code: 8d3z was solved by J.H.Pereira, P.K.Prabhakar, B.R.Urbanowicz, P.D.Adams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.07 / 2.56
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	169.982, 169.982, 73.96, 90, 90, 120
R / Rfree (%)	23 / 26.4

The binding sites of Manganese atom in the Crystal Structure of GALS1 in Complex with Manganese From Populus Trichocarpas (pdb code 8d3z). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of GALS1 in Complex with Manganese From Populus Trichocarpas, PDB code: 8d3z:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of GALS1 in Complex with Manganese From Populus Trichocarpas


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of GALS1 in Complex with Manganese From Populus Trichocarpas within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:108.0 occ:1.00 OD2 A:ASP262 2.5 85.5 1.0 NE2 A:HIS364 2.7 84.4 1.0 ND1 A:HIS366 2.9 125.2 1.0 CE1 A:HIS364 3.1 86.3 1.0 CE1 A:HIS366 3.5 130.9 1.0 CG A:ASP262 3.7 71.8 1.0 CD2 A:HIS364 3.9 87.4 1.0 CG A:HIS366 4.0 123.0 1.0 OD1 A:ASP262 4.2 82.7 1.0 CA A:HIS366 4.2 100.5 1.0 N A:ASN367 4.3 103.7 1.0 ND1 A:HIS364 4.4 78.2 1.0 CB A:HIS366 4.5 109.7 1.0 NE2 A:HIS366 4.7 125.7 1.0 CG A:HIS364 4.8 79.4 1.0 C A:HIS366 4.9 93.2 1.0 CB A:ASP262 4.9 68.5 1.0 CD2 A:HIS366 5.0 114.2 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of GALS1 in Complex with Manganese From Populus Trichocarpas


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of GALS1 in Complex with Manganese From Populus Trichocarpas within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn501 b:111.5 occ:1.00 OD2 B:ASP262 2.3 101.0 1.0 NE2 B:HIS364 2.8 113.1 1.0 CG B:ASP262 3.2 94.4 1.0 CE1 B:HIS364 3.2 104.8 1.0 OD1 B:ASP262 3.4 90.5 1.0 CD2 B:HIS364 3.8 116.7 1.0 OE2 B:GLU263 4.2 102.3 1.0 ND1 B:HIS364 4.3 116.8 1.0 OD2 B:ASP260 4.4 116.9 1.0 CG B:HIS364 4.6 113.4 1.0 CB B:ASP262 4.6 89.4 1.0 CA B:HIS366 4.9 104.4 1.0 N B:ASN367 4.9 100.5 1.0 O B:TYR365 4.9 96.7 1.0 ND1 B:HIS366 4.9 129.2 1.0

P.K.Prabhakar, J.H.Pereira, R.Taujale, W.Shao, V.S.Bharadwaj, D.Chapla, J.Y.Yang, Y.J.Bomble, K.W.Moremen, N.Kannan, M.Hammel, P.D.Adams, H.V.Scheller, B.R.Urbanowicz. Structural and Biochemical Insight Into A Modular Beta-1,4-Galactan Synthase in Plants. Nat.Plants 2023.
ISSN: ESSN 2055-0278
PubMed: 36849618
DOI: 10.1038/S41477-023-01358-4