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Manganese in PDB 8crd: Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position

Enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position

All present enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position:
4.1.1.102;

Protein crystallography data

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position, PDB code: 8crd was solved by G.W.Roberts, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.29 / 1.35
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.78, 64.03, 87.59, 90, 90, 90
R / Rfree (%) 15.2 / 17.6

Other elements in 8crd:

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position also contains other interesting chemical elements:

Potassium (K) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position (pdb code 8crd). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position, PDB code: 8crd:

Manganese binding site 1 out of 1 in 8crd

Go back to Manganese Binding Sites List in 8crd
Manganese binding site 1 out of 1 in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn602

b:14.8
occ:1.00
 OE2 A:GLU233 2.2 14.1 1.0
OD1 A:ASN168 2.2 14.8 1.0
O A:HOH754 2.2 14.6 1.0
O8 A:BYN601 2.2 14.7 1.0
O A:HOH850 2.2 15.1 1.0
ND1 A:HIS191 2.3 13.8 1.0
CG A:ASN168 3.1 15.2 1.0
CE1 A:HIS191 3.2 14.2 1.0
CD A:GLU233 3.2 14.0 1.0
P1 A:BYN601 3.4 14.7 1.0
CG A:HIS191 3.4 15.0 1.0
ND2 A:ASN168 3.4 15.1 1.0
OE1 A:GLU233 3.5 14.9 1.0
O9 A:BYN601 3.6 14.8 1.0
K A:K603 3.6 14.8 1.0
CB A:HIS191 3.8 14.8 1.0
O10 A:BYN601 4.3 15.4 1.0
O A:ILE227 4.3 15.9 1.0
CZ2 A:TRP166 4.4 17.0 1.0
CG1 A:ILE227 4.4 15.6 1.0
NE2 A:HIS191 4.4 14.8 1.0
O A:VAL231 4.5 15.7 1.0
CB A:ASN168 4.5 14.8 1.0
CD2 A:HIS191 4.5 15.6 1.0
O7 A:BYN601 4.5 14.7 1.0
CG A:GLU233 4.5 14.8 1.0
O A:TRP169 4.6 14.4 1.0
NE1 A:TRP166 4.6 16.8 1.0
O A:PRO228 4.7 15.1 1.0
CE2 A:TRP166 4.9 16.7 1.0

Reference:

G.W.Roberts, D.Leys. Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position To Be Published.
Page generated: Thu Dec 28 11:04:16 2023

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