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Manganese in PDB 8btt: Structure of Human Rtcb

Enzymatic activity of Structure of Human Rtcb

All present enzymatic activity of Structure of Human Rtcb:
6.5.1.8;

Protein crystallography data

The structure of Structure of Human Rtcb, PDB code: 8btt was solved by J.Kopp, J.L.Gerber, J.Peschek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.22 / 2.60
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 215.64, 215.64, 46.87, 90, 90, 90
R / Rfree (%) 19.9 / 25.6

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Human Rtcb (pdb code 8btt). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of Human Rtcb, PDB code: 8btt:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 8btt

Go back to Manganese Binding Sites List in 8btt
Manganese binding site 1 out of 2 in the Structure of Human Rtcb


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Human Rtcb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:52.5
occ:1.00
NE2 A:HIS259 2.1 65.4 1.0
SG A:CYS122 2.1 55.8 1.0
NE2 A:HIS353 2.2 52.2 1.0
O A:HOH717 2.2 49.4 1.0
CE1 A:HIS259 3.0 49.7 1.0
CE1 A:HIS353 3.0 48.7 1.0
CD2 A:HIS259 3.1 58.6 1.0
CD2 A:HIS353 3.3 51.9 1.0
CB A:CYS122 3.4 56.6 1.0
C A:CYS122 4.0 64.3 1.0
ND1 A:HIS259 4.1 72.0 1.0
ND1 A:HIS353 4.2 51.4 1.0
CG A:HIS259 4.2 57.4 1.0
N A:GLY123 4.2 52.1 1.0
CA A:CYS122 4.3 51.0 1.0
O A:CYS122 4.3 58.5 1.0
CG A:HIS353 4.3 47.9 1.0
OD1 A:ASN354 4.6 66.0 1.0
CA A:GLY123 4.9 46.5 1.0
O A:HOH718 4.9 58.6 1.0
O A:GLY123 5.0 52.6 1.0

Manganese binding site 2 out of 2 in 8btt

Go back to Manganese Binding Sites List in 8btt
Manganese binding site 2 out of 2 in the Structure of Human Rtcb


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Human Rtcb within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn601

b:127.8
occ:1.00
SG B:CYS122 2.0 64.4 1.0
NE2 B:HIS353 2.2 53.6 1.0
O B:HOH718 2.2 65.5 1.0
NE2 B:HIS259 2.2 66.0 1.0
CE1 B:HIS353 2.9 64.1 1.0
CE1 B:HIS259 3.1 70.6 1.0
CD2 B:HIS259 3.1 52.9 1.0
CD2 B:HIS353 3.3 67.0 1.0
CB B:CYS122 3.4 56.4 1.0
ND1 B:HIS353 4.1 70.0 1.0
ND1 B:HIS259 4.2 77.6 1.0
CG B:HIS259 4.2 72.8 1.0
C B:CYS122 4.3 54.2 1.0
CG B:HIS353 4.3 60.1 1.0
CA B:CYS122 4.4 53.0 1.0
N B:GLY123 4.4 55.5 1.0
OD1 B:ASN354 4.5 60.2 1.0
O B:CYS122 4.6 57.2 1.0
CD2 B:HIS428 4.8 67.8 1.0
O B:GLY123 5.0 58.6 1.0

Reference:

J.L.Gerber, S.I.Morales Guzman, P.Hubbe, J.Kopp, J.Peschek. Structure of Human Rtcb To Be Published.
Page generated: Sun Oct 6 11:27:27 2024

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