Manganese in PDB 7zr1: Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure)
Other elements in 7zr1:
The structure of Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure) also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure)
(pdb code 7zr1). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the
Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure), PDB code: 7zr1:
Jump to Manganese binding site number:
1;
2;
3;
4;
Manganese binding site 1 out
of 4 in 7zr1
Go back to
Manganese Binding Sites List in 7zr1
Manganese binding site 1 out
of 4 in the Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure)
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn801
b:151.1
occ:1.00
|
OD1
|
A:ASP17
|
2.0
|
151.1
|
1.0
|
NE2
|
A:HIS19
|
2.3
|
151.1
|
1.0
|
OD2
|
A:ASP57
|
2.4
|
151.1
|
1.0
|
MN
|
A:MN802
|
2.7
|
151.1
|
1.0
|
NE2
|
A:HIS243
|
2.7
|
151.1
|
1.0
|
CG
|
A:ASP17
|
2.8
|
151.1
|
1.0
|
CE1
|
A:HIS19
|
2.9
|
151.1
|
1.0
|
CD2
|
A:HIS19
|
3.4
|
151.1
|
1.0
|
CG
|
A:ASP57
|
3.4
|
151.1
|
1.0
|
CB
|
A:ASP17
|
3.5
|
151.1
|
1.0
|
CD2
|
A:HIS243
|
3.6
|
151.1
|
1.0
|
OD2
|
A:ASP17
|
3.6
|
151.1
|
1.0
|
CE1
|
A:HIS243
|
3.7
|
151.1
|
1.0
|
CB
|
A:ASP57
|
3.8
|
151.1
|
1.0
|
NE2
|
A:HIS213
|
3.8
|
151.1
|
1.0
|
ND1
|
A:HIS241
|
4.0
|
151.1
|
1.0
|
CE1
|
A:HIS213
|
4.1
|
151.1
|
1.0
|
ND1
|
A:HIS19
|
4.1
|
151.1
|
1.0
|
CE1
|
A:HIS241
|
4.1
|
151.1
|
1.0
|
CA
|
A:ASP17
|
4.2
|
151.1
|
1.0
|
CG
|
A:HIS19
|
4.3
|
151.1
|
1.0
|
O
|
A:HIS241
|
4.4
|
151.1
|
1.0
|
OD1
|
A:ASP57
|
4.5
|
151.1
|
1.0
|
OD1
|
A:ASN124
|
4.7
|
151.1
|
1.0
|
CG
|
A:HIS243
|
4.8
|
151.1
|
1.0
|
ND1
|
A:HIS243
|
4.8
|
151.1
|
1.0
|
|
Manganese binding site 2 out
of 4 in 7zr1
Go back to
Manganese Binding Sites List in 7zr1
Manganese binding site 2 out
of 4 in the Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure)
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn802
b:151.1
occ:1.00
|
NE2
|
A:HIS213
|
1.9
|
151.1
|
1.0
|
ND1
|
A:HIS241
|
2.0
|
151.1
|
1.0
|
OD2
|
A:ASP57
|
2.0
|
151.1
|
1.0
|
CE1
|
A:HIS241
|
2.3
|
151.1
|
1.0
|
OD1
|
A:ASN124
|
2.4
|
151.1
|
1.0
|
MN
|
A:MN801
|
2.7
|
151.1
|
1.0
|
CD2
|
A:HIS213
|
2.8
|
151.1
|
1.0
|
CE1
|
A:HIS213
|
2.9
|
151.1
|
1.0
|
CG
|
A:ASP57
|
3.1
|
151.1
|
1.0
|
OD1
|
A:ASP17
|
3.2
|
151.1
|
1.0
|
CG
|
A:HIS241
|
3.4
|
151.1
|
1.0
|
CG
|
A:ASN124
|
3.5
|
151.1
|
1.0
|
NE2
|
A:HIS241
|
3.6
|
151.1
|
1.0
|
OD1
|
A:ASP57
|
3.7
|
151.1
|
1.0
|
ND2
|
A:ASN124
|
3.9
|
151.1
|
1.0
|
ND1
|
A:HIS213
|
4.0
|
151.1
|
1.0
|
CG
|
A:HIS213
|
4.0
|
151.1
|
1.0
|
CD2
|
A:HIS241
|
4.1
|
151.1
|
1.0
|
CB
|
A:HIS241
|
4.2
|
151.1
|
1.0
|
CA
|
A:HIS241
|
4.2
|
151.1
|
1.0
|
CG
|
A:ASP17
|
4.2
|
151.1
|
1.0
|
CB
|
A:ASP57
|
4.3
|
151.1
|
1.0
|
OD2
|
A:ASP17
|
4.5
|
151.1
|
1.0
|
O
|
A:HIS241
|
4.6
|
151.1
|
1.0
|
NE2
|
A:HIS19
|
4.8
|
151.1
|
1.0
|
CB
|
A:ASN124
|
4.8
|
151.1
|
1.0
|
O
|
A:GLY240
|
4.9
|
151.1
|
1.0
|
C
|
A:HIS241
|
4.9
|
151.1
|
1.0
|
N
|
A:ASN124
|
4.9
|
151.1
|
1.0
|
NE2
|
A:HIS243
|
5.0
|
151.1
|
1.0
|
|
Manganese binding site 3 out
of 4 in 7zr1
Go back to
Manganese Binding Sites List in 7zr1
Manganese binding site 3 out
of 4 in the Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure)
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn801
b:151.1
occ:1.00
|
OD2
|
B:ASP17
|
1.9
|
151.1
|
1.0
|
NE2
|
B:HIS19
|
2.1
|
151.1
|
1.0
|
NE2
|
B:HIS243
|
2.3
|
151.1
|
1.0
|
CE1
|
B:HIS19
|
2.8
|
151.1
|
1.0
|
CG
|
B:ASP17
|
2.9
|
151.1
|
1.0
|
MN
|
B:MN802
|
3.0
|
151.1
|
1.0
|
CE1
|
B:HIS243
|
3.0
|
151.1
|
1.0
|
OD2
|
B:ASP57
|
3.1
|
151.1
|
1.0
|
CD2
|
B:HIS19
|
3.3
|
151.1
|
1.0
|
CD2
|
B:HIS243
|
3.4
|
151.1
|
1.0
|
CB
|
B:ASP17
|
3.6
|
151.1
|
1.0
|
OD1
|
B:ASP17
|
3.8
|
151.1
|
1.0
|
ND1
|
B:HIS241
|
3.9
|
151.1
|
1.0
|
ND1
|
B:HIS19
|
4.0
|
151.1
|
1.0
|
O
|
B:HIS241
|
4.0
|
151.1
|
1.0
|
CG
|
B:ASP57
|
4.1
|
151.1
|
1.0
|
ND1
|
B:HIS243
|
4.2
|
151.1
|
1.0
|
CE1
|
B:HIS241
|
4.2
|
151.1
|
1.0
|
CE1
|
B:HIS216
|
4.3
|
150.6
|
1.0
|
CG
|
B:HIS19
|
4.3
|
151.1
|
1.0
|
CG
|
B:HIS243
|
4.4
|
151.1
|
1.0
|
CB
|
B:ASP57
|
4.4
|
151.1
|
1.0
|
CA
|
B:ASP17
|
4.5
|
151.1
|
1.0
|
CE1
|
B:HIS213
|
4.7
|
122.9
|
1.0
|
NE2
|
B:HIS213
|
4.8
|
122.9
|
1.0
|
C
|
B:HIS241
|
4.9
|
151.1
|
1.0
|
NE2
|
B:HIS216
|
4.9
|
150.6
|
1.0
|
CA
|
B:HIS241
|
5.0
|
151.1
|
1.0
|
|
Manganese binding site 4 out
of 4 in 7zr1
Go back to
Manganese Binding Sites List in 7zr1
Manganese binding site 4 out
of 4 in the Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure)
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn802
b:151.1
occ:1.00
|
OD2
|
B:ASP57
|
2.0
|
151.1
|
1.0
|
ND1
|
B:HIS241
|
2.0
|
151.1
|
1.0
|
CE1
|
B:HIS216
|
2.3
|
150.6
|
1.0
|
NE2
|
B:HIS213
|
2.4
|
122.9
|
1.0
|
NE2
|
B:HIS216
|
2.4
|
150.6
|
1.0
|
CE1
|
B:HIS241
|
2.6
|
151.1
|
1.0
|
MN
|
B:MN801
|
3.0
|
151.1
|
1.0
|
CE1
|
B:HIS213
|
3.1
|
122.9
|
1.0
|
CG
|
B:ASP57
|
3.2
|
151.1
|
1.0
|
CG
|
B:HIS241
|
3.3
|
151.1
|
1.0
|
ND1
|
B:HIS216
|
3.4
|
150.6
|
1.0
|
CD2
|
B:HIS213
|
3.5
|
122.9
|
1.0
|
OD2
|
B:ASP17
|
3.6
|
151.1
|
1.0
|
CD2
|
B:HIS216
|
3.6
|
150.6
|
1.0
|
OD1
|
B:ASP57
|
3.7
|
151.1
|
1.0
|
CA
|
B:HIS241
|
3.8
|
151.1
|
1.0
|
NE2
|
B:HIS241
|
3.9
|
151.1
|
1.0
|
CB
|
B:HIS241
|
3.9
|
151.1
|
1.0
|
CG
|
B:HIS216
|
4.0
|
150.6
|
1.0
|
CD2
|
B:HIS241
|
4.2
|
151.1
|
1.0
|
ND1
|
B:HIS213
|
4.3
|
122.9
|
1.0
|
CG
|
B:ASP17
|
4.3
|
151.1
|
1.0
|
O
|
B:HIS241
|
4.4
|
151.1
|
1.0
|
OD1
|
B:ASP17
|
4.4
|
151.1
|
1.0
|
CB
|
B:ASP57
|
4.4
|
151.1
|
1.0
|
CG
|
B:HIS213
|
4.5
|
122.9
|
1.0
|
C
|
B:HIS241
|
4.6
|
151.1
|
1.0
|
NE2
|
B:HIS19
|
4.7
|
151.1
|
1.0
|
N
|
B:HIS241
|
4.8
|
151.1
|
1.0
|
NE2
|
B:HIS243
|
4.8
|
151.1
|
1.0
|
CE1
|
B:HIS19
|
4.9
|
151.1
|
1.0
|
|
Reference:
M.Rotheneder,
K.Stakyte,
E.Van De Logt,
J.D.Bartho,
K.Lammens,
Y.Fan,
A.Alt,
B.Kessler,
C.Jung,
W.P.Roos,
B.Steigenberger,
K.P.Hopfner.
Cryo-Em Structure of the MRE11-RAD50-NBS1 Complex Reveals the Molecular Mechanism of Scaffolding Functions. Mol.Cell 2022.
ISSN: ISSN 1097-2765
PubMed: 36577401
DOI: 10.1016/J.MOLCEL.2022.12.003
Page generated: Sun Oct 6 11:13:50 2024
|