Manganese in PDB 7yos: RECJ2 and Mn Complex From Methanocaldococcus Jannaschii

The structure of RECJ2 and Mn Complex From Methanocaldococcus Jannaschii, PDB code: 7yos was solved by W.W.Wang, X.P.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.05 / 2.17
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	83.91, 175.82, 66.19, 90, 90, 90
R / Rfree (%)	20.5 / 24

The binding sites of Manganese atom in the RECJ2 and Mn Complex From Methanocaldococcus Jannaschii (pdb code 7yos). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the RECJ2 and Mn Complex From Methanocaldococcus Jannaschii, PDB code: 7yos:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the RECJ2 and Mn Complex From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of RECJ2 and Mn Complex From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:52.6 occ:1.00 OD2 A:ASP165 2.2 39.1 1.0 NE2 A:HIS106 2.5 32.7 1.0 OD2 A:ASP35 2.5 37.4 1.0 O A:HOH621 2.6 30.0 1.0 CG A:ASP165 3.2 34.9 1.0 CE1 A:HIS106 3.3 35.6 1.0 OD1 A:ASP165 3.4 35.6 1.0 CG A:ASP35 3.4 38.4 1.0 CD2 A:HIS106 3.6 34.6 1.0 CB A:ASP35 3.6 33.2 1.0 N A:ALA138 4.4 30.6 1.0 ND1 A:HIS106 4.4 37.4 1.0 CB A:ASP165 4.5 32.1 1.0 CE1 A:HIS402 4.6 64.0 1.0 CB A:ALA138 4.6 32.8 1.0 OD1 A:ASP35 4.6 34.9 1.0 CG A:HIS106 4.6 38.5 1.0 CB A:THR137 4.9 39.2 1.0 OD2 A:ASP33 5.0 48.1 1.0

Manganese binding site 2 out of 2 in the RECJ2 and Mn Complex From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of RECJ2 and Mn Complex From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn501 b:35.6 occ:1.00 OD2 B:ASP165 2.2 29.0 1.0 OD2 B:ASP35 2.3 25.4 1.0 NE2 B:HIS106 2.3 28.9 1.0 O B:HOH651 2.4 35.1 1.0 O B:HOH648 2.5 32.4 1.0 CE1 B:HIS106 3.1 28.1 1.0 CG B:ASP165 3.2 31.9 1.0 CG B:ASP35 3.3 24.8 1.0 CD2 B:HIS106 3.4 25.5 1.0 OD1 B:ASP165 3.5 33.5 1.0 CB B:ASP35 3.6 26.1 1.0 O B:HOH647 4.0 30.0 1.0 O B:HOH638 4.2 30.0 1.0 N B:ALA138 4.3 23.3 1.0 ND1 B:HIS106 4.3 28.3 1.0 O B:HOH654 4.3 33.8 1.0 OD1 B:ASP35 4.4 27.0 1.0 CB B:ALA138 4.5 24.1 1.0 CG B:HIS106 4.5 31.1 1.0 CB B:ASP165 4.5 26.2 1.0 CB B:THR137 4.7 26.2 1.0 OD2 B:ASP33 4.9 36.4 1.0 CA B:THR137 5.0 24.6 1.0

W.W.Wang, G.S.Yi, H.Zhou, Y.X.Zhao, Q.S.Wang, J.H.He, F.Yu, X.Xiao, X.P.Liu. The Structure of Nuclease RECJ2 From Methanocaldococcus Jannaschii To Be Published.