Atomistry » Manganese » PDB 7x9j-7yzp » 7yba
Atomistry »
  Manganese »
    PDB 7x9j-7yzp »
      7yba »

Manganese in PDB 7yba: Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) Oxygenase and Tpr Domains in Complex with D-4-Hydroxy-2-Oxoglutarate

Enzymatic activity of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) Oxygenase and Tpr Domains in Complex with D-4-Hydroxy-2-Oxoglutarate

All present enzymatic activity of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) Oxygenase and Tpr Domains in Complex with D-4-Hydroxy-2-Oxoglutarate:
1.14.11.16;

Protein crystallography data

The structure of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) Oxygenase and Tpr Domains in Complex with D-4-Hydroxy-2-Oxoglutarate, PDB code: 7yba was solved by Y.Nakashima, L.Brewitz, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 86.22 / 1.86
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.7, 70.202, 172.449, 90, 90, 90
R / Rfree (%) 18.1 / 20.2

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) Oxygenase and Tpr Domains in Complex with D-4-Hydroxy-2-Oxoglutarate (pdb code 7yba). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) Oxygenase and Tpr Domains in Complex with D-4-Hydroxy-2-Oxoglutarate, PDB code: 7yba:

Manganese binding site 1 out of 1 in 7yba

Go back to Manganese Binding Sites List in 7yba
Manganese binding site 1 out of 1 in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) Oxygenase and Tpr Domains in Complex with D-4-Hydroxy-2-Oxoglutarate


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) Oxygenase and Tpr Domains in Complex with D-4-Hydroxy-2-Oxoglutarate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn801

b:23.5
occ:1.00
 NE2 A:HIS725 1.9 25.7 1.0
O A:HOH929 2.0 23.8 1.0
O06 A:IO9802 2.0 27.4 1.0
O A:HOH1012 2.1 28.3 1.0
O04 A:IO9802 2.1 27.9 1.0
NE2 A:HIS679 2.2 26.8 1.0
C02 A:IO9802 2.8 29.1 1.0
C05 A:IO9802 2.8 36.4 1.0
CE1 A:HIS725 2.9 28.0 1.0
CD2 A:HIS725 2.9 28.4 1.0
CE1 A:HIS679 3.0 24.1 1.0
HE1 A:HIS679 3.1 28.9 1.0
HE1 A:HIS725 3.1 33.6 1.0
HD2 A:HIS725 3.1 34.1 1.0
CD2 A:HIS679 3.3 33.5 1.0
HD2 A:HIS679 3.6 40.2 1.0
HH11 A:ARG688 3.7 38.4 1.0
O A:HOH994 3.8 52.3 1.0
O A:HOH1095 3.9 59.1 1.0
ND1 A:HIS725 4.0 23.1 1.0
CG A:HIS725 4.0 23.0 1.0
HB2 A:ASP721 4.1 29.1 1.0
ND1 A:HIS679 4.2 26.1 1.0
O03 A:IO9802 4.2 28.7 1.0
HH12 A:ARG688 4.2 38.4 1.0
NH1 A:ARG688 4.2 32.0 1.0
C04 A:IO9802 4.3 30.2 1.0
OD2 A:ASP721 4.3 32.4 1.0
CG A:HIS679 4.4 23.4 1.0
H06 A:IO9802 4.5 36.2 1.0
HD13 A:LEU619 4.7 46.6 1.0
H05 A:IO9802 4.8 36.2 1.0
HD1 A:HIS725 4.8 27.7 1.0
HZ A:PHE719 4.8 31.9 1.0
HD1 A:HIS679 4.9 31.3 1.0
HD2 A:ARG688 4.9 48.0 1.0
HE2 A:PHE719 4.9 41.3 1.0
HD3 A:ARG688 5.0 48.0 1.0

Reference:

Y.Nakashima, L.Brewitz, C.J.Schofield. Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) Oxygenase and Tpr Domains in Complex with D-4-Hydroxy-2-Oxoglutarate To Be Published.
Page generated: Sun Oct 6 11:08:32 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy