Manganese in PDB 7y1t: Complex of Integrin Alphav/BETA8 and L-Tgf-BETA1 at A Ratio of 1:2

The structure of Complex of Integrin Alphav/BETA8 and L-Tgf-BETA1 at A Ratio of 1:2 also contains other interesting chemical elements:

Calcium

(Ca)

5 atoms

The binding sites of Manganese atom in the Complex of Integrin Alphav/BETA8 and L-Tgf-BETA1 at A Ratio of 1:2 (pdb code 7y1t). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Complex of Integrin Alphav/BETA8 and L-Tgf-BETA1 at A Ratio of 1:2, PDB code: 7y1t:

Manganese binding site 1 out of 1 in the Complex of Integrin Alphav/BETA8 and L-Tgf-BETA1 at A Ratio of 1:2


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Complex of Integrin Alphav/BETA8 and L-Tgf-BETA1 at A Ratio of 1:2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn505 b:85.0 occ:1.00 OD1 D:ASP217 2.0 82.5 1.0 OG B:SER114 2.3 73.5 1.0 NE2 B:GLN244 2.6 70.9 1.0 OG B:SER116 2.7 80.3 1.0 CB B:SER114 2.9 73.5 1.0 CG B:GLU212 3.1 69.2 1.0 CG D:ASP217 3.2 82.5 1.0 OE2 B:GLU212 3.3 69.2 1.0 CD B:GLU212 3.5 69.2 1.0 CB B:SER116 3.5 80.3 1.0 CD B:GLN244 3.7 70.9 1.0 OD2 D:ASP217 3.9 82.5 1.0 OD2 B:ASP112 4.0 66.0 1.0 N B:SER116 4.1 80.3 1.0 CB D:ASP217 4.2 82.5 1.0 CA B:SER114 4.3 73.5 1.0 O B:THR210 4.4 70.7 1.0 OE1 B:GLN244 4.4 70.9 1.0 CA B:SER116 4.4 80.3 1.0 OE1 B:GLU212 4.4 69.2 1.0 CB B:GLU212 4.5 69.2 1.0 C B:SER114 4.6 73.5 1.0 N B:ALA115 4.6 77.6 1.0 CG B:GLN244 4.6 70.9 1.0 CA D:ASP217 4.9 82.5 1.0 CG B:ASP112 5.0 66.0 1.0

Z.Duan, X.Lin, L.Wang, Q.Zhen, Y.Jiang, C.Chen, J.Yang, C.H.Lee, Y.Qin, Y.Li, B.Zhao, J.Wang, Z.Zhang. Specificity of Tgf-Beta 1 Signal Designated By LRRC33 and Integrin Alpha V Beta 8. Nat Commun V. 13 4988 2022.
ISSN: ESSN 2041-1723
PubMed: 36008481
DOI: 10.1038/S41467-022-32655-9