Manganese in PDB 7x7w: The X-Ray Crystallographic Structure of D-Psicose 3-Epimerase From Clostridia Bacterium

The structure of The X-Ray Crystallographic Structure of D-Psicose 3-Epimerase From Clostridia Bacterium, PDB code: 7x7w was solved by Z.F.Li, X.F.Ban, X.F.Xie, Y.X.Tian, C.M.Li, Z.B.Gu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.94 / 2.10
Space group	I 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	60.018, 70.657, 153.784, 90, 99.32, 90
R / Rfree (%)	20 / 25.4

The binding sites of Manganese atom in the The X-Ray Crystallographic Structure of D-Psicose 3-Epimerase From Clostridia Bacterium (pdb code 7x7w). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The X-Ray Crystallographic Structure of D-Psicose 3-Epimerase From Clostridia Bacterium, PDB code: 7x7w:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The X-Ray Crystallographic Structure of D-Psicose 3-Epimerase From Clostridia Bacterium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The X-Ray Crystallographic Structure of D-Psicose 3-Epimerase From Clostridia Bacterium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:44.6 occ:0.57 OE2 A:GLU150 1.9 45.2 1.0 OD2 A:ASP183 2.1 39.3 1.0 ND1 A:HIS209 2.3 41.6 1.0 O A:HOH485 2.3 48.1 1.0 OE1 A:GLU244 2.4 49.9 1.0 CD A:GLU150 3.1 42.0 1.0 CG A:ASP183 3.2 36.0 1.0 CG A:HIS209 3.2 38.2 1.0 CE1 A:HIS209 3.3 39.2 1.0 CD A:GLU244 3.5 44.2 1.0 CB A:HIS209 3.5 34.9 1.0 OE1 A:GLU150 3.6 42.4 1.0 CB A:ASP183 3.7 36.1 1.0 OE2 A:GLU244 3.8 49.1 1.0 O A:HOH426 3.9 43.3 1.0 CD2 A:HIS186 4.2 35.6 1.0 CE A:MET181 4.2 41.7 1.0 NE2 A:HIS186 4.2 35.2 1.0 OD1 A:ASP183 4.3 35.5 1.0 NH2 A:ARG215 4.3 41.0 1.0 CG A:GLU150 4.3 40.7 1.0 NE2 A:HIS209 4.4 42.1 1.0 CD2 A:HIS209 4.4 40.2 1.0 CG A:GLU244 4.8 46.2 1.0 CB A:GLU244 4.9 38.2 1.0 O A:HOH446 4.9 44.7 1.0

Manganese binding site 2 out of 2 in the The X-Ray Crystallographic Structure of D-Psicose 3-Epimerase From Clostridia Bacterium


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The X-Ray Crystallographic Structure of D-Psicose 3-Epimerase From Clostridia Bacterium within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn301 b:54.2 occ:0.63 OE2 B:GLU150 2.1 48.2 1.0 OD2 B:ASP183 2.1 46.2 1.0 ND1 B:HIS209 2.4 48.4 1.0 O B:HOH444 2.4 56.3 1.0 OE1 B:GLU244 2.4 54.8 1.0 CD B:GLU150 3.2 46.5 1.0 CE1 B:HIS209 3.2 53.0 1.0 CG B:ASP183 3.3 44.8 1.0 CD B:GLU244 3.4 54.8 1.0 CG B:HIS209 3.4 50.3 1.0 OE1 B:GLU150 3.6 44.2 1.0 CB B:HIS209 3.7 46.9 1.0 OE2 B:GLU244 3.8 59.6 1.0 CB B:ASP183 3.9 40.2 1.0 NE2 B:HIS186 4.0 44.9 1.0 CD2 B:HIS186 4.0 42.9 1.0 OD1 B:ASP183 4.3 41.8 1.0 NE2 B:HIS209 4.4 50.7 1.0 CG B:GLU150 4.5 44.3 1.0 CE B:MET181 4.5 49.1 1.0 CD2 B:HIS209 4.5 49.6 1.0 NH2 B:ARG215 4.6 51.4 1.0 CG B:GLU244 4.7 54.5 1.0 CB B:GLU244 4.8 50.1 1.0 O B:HOH419 4.9 54.0 1.0

X.Xie, Y.Tian, X.Ban, C.Li, H.Yang, Z.Li. Crystal Structure of A Novel Homodimeric D-Allulose 3-Epimerase From A Clostridia Bacterium Acta Crystallogr.,Sect.D V. 78 1180 2022.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798322007707