Manganese in PDB 7wwa: Crystal Structure of Mutt-8-Oxo-Dgtp Complex: Reaction For 2.5 Hr in 20 Mm MN2+

Enzymatic activity of Crystal Structure of Mutt-8-Oxo-Dgtp Complex: Reaction For 2.5 Hr in 20 Mm MN2+

All present enzymatic activity of Crystal Structure of Mutt-8-Oxo-Dgtp Complex: Reaction For 2.5 Hr in 20 Mm MN2+:
3.6.1.55;

Protein crystallography data

The structure of Crystal Structure of Mutt-8-Oxo-Dgtp Complex: Reaction For 2.5 Hr in 20 Mm MN2+, PDB code: 7wwa was solved by T.Nakamura, Y.Yamagata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.17 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.288, 56.013, 59.296, 90, 90, 90
R / Rfree (%) 16 / 21.1

Other elements in 7wwa:

The structure of Crystal Structure of Mutt-8-Oxo-Dgtp Complex: Reaction For 2.5 Hr in 20 Mm MN2+ also contains other interesting chemical elements:

Sodium (Na) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Mutt-8-Oxo-Dgtp Complex: Reaction For 2.5 Hr in 20 Mm MN2+ (pdb code 7wwa). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Mutt-8-Oxo-Dgtp Complex: Reaction For 2.5 Hr in 20 Mm MN2+, PDB code: 7wwa:

Manganese binding site 1 out of 1 in 7wwa

Go back to Manganese Binding Sites List in 7wwa
Manganese binding site 1 out of 1 in the Crystal Structure of Mutt-8-Oxo-Dgtp Complex: Reaction For 2.5 Hr in 20 Mm MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Mutt-8-Oxo-Dgtp Complex: Reaction For 2.5 Hr in 20 Mm MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn203

b:11.9
occ:0.80
 O A:GLY37 2.2 9.2 1.0
OP2 A:8OG201 2.3 12.6 1.0
OE2 A:GLU57 2.4 12.9 1.0
O A:HOH305 2.4 19.6 1.0
O A:HOH322 2.4 14.6 1.0
O A:HOH404 2.4 17.3 1.0
CD A:GLU57 3.3 15.4 1.0
NA A:NA204 3.3 25.2 1.0
P A:8OG201 3.4 16.1 1.0
C A:GLY37 3.4 12.3 1.0
OE1 A:GLU57 3.5 11.6 1.0
OP1 A:8OG201 3.7 20.1 1.0
O A:HOH311 3.8 22.2 1.0
N2 A:8OG201 3.8 6.6 1.0
CA A:GLY38 4.1 8.3 1.0
O A:HOH334 4.2 21.4 1.0
OP3 A:8OG201 4.2 16.1 1.0
N A:GLY38 4.2 9.7 1.0
N A:GLY37 4.3 6.5 1.0
O A:HOH323 4.3 18.1 1.0
OE1 A:GLU53 4.4 12.3 1.0
NH1 A:ARG23 4.4 9.7 1.0
CA A:GLY37 4.5 6.8 1.0
OE1 A:GLU34 4.6 9.8 1.0
CG A:GLU57 4.6 9.6 1.0
O5' A:8OG201 4.6 14.9 1.0
O A:HOH303 4.9 19.5 1.0
C5' A:8OG201 4.9 10.7 1.0

Reference:

T.Nakamura, Y.Yamagata. Visualization of Mutagenic Nucleotide Processing By Escherichia Coli Mutt, A Nudix Hydrolase. Proc.Natl.Acad.Sci.Usa V. 119 18119 2022.
ISSN: ESSN 1091-6490
PubMed: 35594391
DOI: 10.1073/PNAS.2203118119
Page generated: Fri Apr 7 12:59:28 2023

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