Manganese in PDB 7w7b: Heme Exporter Hrtba in Complex with Protoporphyrin IX Containing Manganese(III), High Resolution Data
Protein crystallography data
The structure of Heme Exporter Hrtba in Complex with Protoporphyrin IX Containing Manganese(III), High Resolution Data, PDB code: 7w7b
was solved by
T.Hisano,
H.Nakamura,
M.M.Rahman,
T.Tosha,
M.Shirouzu,
Y.Shiro,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.39 /
3.00
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
82.001,
133.485,
159.341,
111.65,
99.69,
94.64
|
R / Rfree (%)
|
26.6 /
29.9
|
Manganese Binding Sites:
The binding sites of Manganese atom in the Heme Exporter Hrtba in Complex with Protoporphyrin IX Containing Manganese(III), High Resolution Data
(pdb code 7w7b). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the
Heme Exporter Hrtba in Complex with Protoporphyrin IX Containing Manganese(III), High Resolution Data, PDB code: 7w7b:
Jump to Manganese binding site number:
1;
2;
Manganese binding site 1 out
of 2 in 7w7b
Go back to
Manganese Binding Sites List in 7w7b
Manganese binding site 1 out
of 2 in the Heme Exporter Hrtba in Complex with Protoporphyrin IX Containing Manganese(III), High Resolution Data
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Heme Exporter Hrtba in Complex with Protoporphyrin IX Containing Manganese(III), High Resolution Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn401
b:119.8
occ:1.00
|
MN
|
D:MNR401
|
0.0
|
119.8
|
1.0
|
NA
|
D:MNR401
|
2.0
|
119.8
|
1.0
|
NB
|
D:MNR401
|
2.0
|
119.8
|
1.0
|
NC
|
D:MNR401
|
2.0
|
119.8
|
1.0
|
ND
|
D:MNR401
|
2.1
|
119.8
|
1.0
|
OE2
|
D:GLU219
|
2.2
|
151.1
|
1.0
|
OE2
|
B:GLU219
|
2.2
|
129.3
|
1.0
|
C1C
|
D:MNR401
|
3.1
|
119.8
|
1.0
|
C4B
|
D:MNR401
|
3.1
|
119.8
|
1.0
|
C1A
|
D:MNR401
|
3.1
|
119.8
|
1.0
|
C4A
|
D:MNR401
|
3.1
|
119.8
|
1.0
|
C1B
|
D:MNR401
|
3.1
|
119.8
|
1.0
|
C4C
|
D:MNR401
|
3.1
|
119.8
|
1.0
|
C4D
|
D:MNR401
|
3.1
|
119.8
|
1.0
|
C1D
|
D:MNR401
|
3.1
|
119.8
|
1.0
|
CHC
|
D:MNR401
|
3.4
|
119.8
|
1.0
|
CD
|
D:GLU219
|
3.4
|
151.7
|
1.0
|
CHA
|
D:MNR401
|
3.4
|
119.8
|
1.0
|
CHB
|
D:MNR401
|
3.4
|
119.8
|
1.0
|
CD
|
B:GLU219
|
3.5
|
127.3
|
1.0
|
CHD
|
D:MNR401
|
3.5
|
119.8
|
1.0
|
CG
|
D:GLU219
|
4.1
|
148.4
|
1.0
|
OE1
|
B:GLU219
|
4.3
|
127.2
|
1.0
|
C2B
|
D:MNR401
|
4.3
|
119.8
|
1.0
|
C3A
|
D:MNR401
|
4.3
|
119.8
|
1.0
|
C2C
|
D:MNR401
|
4.3
|
119.8
|
1.0
|
CG
|
B:GLU219
|
4.3
|
125.1
|
1.0
|
C3C
|
D:MNR401
|
4.3
|
119.8
|
1.0
|
C2A
|
D:MNR401
|
4.3
|
119.8
|
1.0
|
C3D
|
D:MNR401
|
4.4
|
119.8
|
1.0
|
C2D
|
D:MNR401
|
4.4
|
119.8
|
1.0
|
C3B
|
D:MNR401
|
4.4
|
119.8
|
1.0
|
OE1
|
D:GLU219
|
4.4
|
154.9
|
1.0
|
CD1
|
D:LEU39
|
4.5
|
193.7
|
1.0
|
NE2
|
D:HIS163
|
4.5
|
152.2
|
1.0
|
CB
|
D:GLU219
|
4.8
|
147.4
|
1.0
|
CB
|
B:GLU219
|
4.9
|
127.0
|
1.0
|
CE1
|
D:HIS163
|
4.9
|
150.9
|
1.0
|
|
Manganese binding site 2 out
of 2 in 7w7b
Go back to
Manganese Binding Sites List in 7w7b
Manganese binding site 2 out
of 2 in the Heme Exporter Hrtba in Complex with Protoporphyrin IX Containing Manganese(III), High Resolution Data
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Heme Exporter Hrtba in Complex with Protoporphyrin IX Containing Manganese(III), High Resolution Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mn401
b:179.8
occ:1.00
|
MN
|
H:MNR401
|
0.0
|
179.8
|
1.0
|
NA
|
H:MNR401
|
2.0
|
179.8
|
1.0
|
NB
|
H:MNR401
|
2.0
|
179.8
|
1.0
|
NC
|
H:MNR401
|
2.0
|
179.8
|
1.0
|
ND
|
H:MNR401
|
2.1
|
179.8
|
1.0
|
OE2
|
H:GLU219
|
2.2
|
168.4
|
1.0
|
OE2
|
F:GLU219
|
2.2
|
141.8
|
1.0
|
C1C
|
H:MNR401
|
3.1
|
179.8
|
1.0
|
C1A
|
H:MNR401
|
3.1
|
179.8
|
1.0
|
C1B
|
H:MNR401
|
3.1
|
179.8
|
1.0
|
C4B
|
H:MNR401
|
3.1
|
179.8
|
1.0
|
C4A
|
H:MNR401
|
3.1
|
179.8
|
1.0
|
C4C
|
H:MNR401
|
3.1
|
179.8
|
1.0
|
C4D
|
H:MNR401
|
3.1
|
179.8
|
1.0
|
C1D
|
H:MNR401
|
3.1
|
179.8
|
1.0
|
CD
|
H:GLU219
|
3.3
|
167.4
|
1.0
|
CHC
|
H:MNR401
|
3.4
|
179.8
|
1.0
|
CHA
|
H:MNR401
|
3.4
|
179.8
|
1.0
|
CHB
|
H:MNR401
|
3.4
|
179.8
|
1.0
|
CHD
|
H:MNR401
|
3.5
|
179.8
|
1.0
|
CD
|
F:GLU219
|
3.5
|
139.8
|
1.0
|
CG
|
H:GLU219
|
3.9
|
165.4
|
1.0
|
CG
|
F:GLU219
|
4.3
|
136.7
|
1.0
|
C2B
|
H:MNR401
|
4.3
|
179.8
|
1.0
|
C3A
|
H:MNR401
|
4.3
|
179.8
|
1.0
|
C2C
|
H:MNR401
|
4.3
|
179.8
|
1.0
|
C3C
|
H:MNR401
|
4.3
|
179.8
|
1.0
|
C2A
|
H:MNR401
|
4.3
|
179.8
|
1.0
|
OE1
|
H:GLU219
|
4.4
|
168.1
|
1.0
|
C3D
|
H:MNR401
|
4.4
|
179.8
|
1.0
|
C2D
|
H:MNR401
|
4.4
|
179.8
|
1.0
|
OE1
|
F:GLU219
|
4.4
|
140.4
|
1.0
|
C3B
|
H:MNR401
|
4.4
|
179.8
|
1.0
|
CD1
|
H:LEU39
|
4.5
|
226.8
|
1.0
|
CB
|
H:GLU219
|
4.7
|
164.7
|
1.0
|
CE1
|
H:HIS163
|
4.8
|
180.4
|
1.0
|
CB
|
F:GLU219
|
4.8
|
137.3
|
1.0
|
NE2
|
H:HIS163
|
4.8
|
179.5
|
1.0
|
|
Reference:
H.Nakamura,
T.Hisano,
M.M.Rahman,
T.Tosha,
M.Shirouzu,
Y.Shiro.
Heme Exporter Complexed with Amppnp To Be Published.
Page generated: Sun Oct 6 10:59:24 2024
|