Manganese in PDB 7vg8: Tylcv Rep-Dna

The structure of Tylcv Rep-Dna, PDB code: 7vg8 was solved by S.Y.Zhang, C.N.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.50 / 2.04
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	67.976, 67.976, 40.433, 90, 90, 90
R / Rfree (%)	22.2 / 26.7

The binding sites of Manganese atom in the Tylcv Rep-Dna (pdb code 7vg8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Tylcv Rep-Dna, PDB code: 7vg8:

Manganese binding site 1 out of 1 in the Tylcv Rep-Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Tylcv Rep-Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:19.9 occ:1.00 OE1 A:GLU47 1.9 22.7 1.0 OP1 C:DA306 2.1 22.2 1.0 NE2 A:HIS55 2.2 20.6 1.0 O A:HOH346 2.3 23.1 1.0 NE2 A:HIS57 2.4 19.0 1.0 O3' C:DT305 2.9 24.1 1.0 CD A:GLU47 3.1 23.8 1.0 P C:DA306 3.1 18.9 1.0 CE1 A:HIS55 3.1 21.5 1.0 CD2 A:HIS57 3.2 18.4 1.0 CD2 A:HIS55 3.2 18.7 1.0 CE1 A:HIS57 3.5 17.0 1.0 CB A:GLU47 3.6 20.7 1.0 O5' C:DA306 3.9 21.6 1.0 CG A:GLU47 3.9 20.2 1.0 OE2 A:GLU47 4.0 24.0 1.0 C3' C:DT305 4.2 22.9 1.0 ND1 A:HIS55 4.3 20.2 1.0 CG A:HIS55 4.4 19.6 1.0 OP2 C:DA306 4.4 23.2 1.0 CG A:HIS57 4.4 18.2 1.0 O A:HOH309 4.5 31.7 1.0 NZ A:LYS104 4.5 24.8 1.0 ND1 A:HIS57 4.5 19.1 1.0 C4' C:DT305 4.7 21.7 1.0 CZ A:PHE101 4.7 21.3 1.0 C2' C:DT305 4.8 19.3 1.0 CE2 A:PHE101 5.0 25.0 1.0

S.Y.Zhang, C.N.Wang. Structure of Tylcv Rep Complexed with Ssdna To Be Published.