Manganese in PDB 7va3: Paorn Oligoribonuclease D11A Mutant with Substrate Pgpg Complex Structure

The structure of Paorn Oligoribonuclease D11A Mutant with Substrate Pgpg Complex Structure, PDB code: 7va3 was solved by J.Zhang, Q.Zhang, M.Bartlam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.61 / 1.80
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	83.223, 83.223, 192.553, 90, 90, 90
R / Rfree (%)	17.2 / 19.1

The binding sites of Manganese atom in the Paorn Oligoribonuclease D11A Mutant with Substrate Pgpg Complex Structure (pdb code 7va3). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Paorn Oligoribonuclease D11A Mutant with Substrate Pgpg Complex Structure, PDB code: 7va3:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Paorn Oligoribonuclease D11A Mutant with Substrate Pgpg Complex Structure


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Paorn Oligoribonuclease D11A Mutant with Substrate Pgpg Complex Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn202 b:124.2 occ:1.00 O A:HOH412 2.6 84.9 1.0 NH2 A:ARG148 3.0 77.6 1.0 O A:HOH396 3.3 70.7 1.0 NZ A:LYS137 3.3 41.2 1.0 O C:HOH105 3.9 42.2 1.0 CE A:LYS137 4.1 40.7 1.0 CZ A:ARG148 4.2 82.8 1.0 CD A:LYS137 4.2 39.6 1.0 NH2 B:ARG129 4.4 39.0 1.0 O A:HOH385 4.7 73.0 1.0 CD A:LYS153 4.9 69.4 1.0 NH1 A:ARG148 4.9 85.0 1.0 CG A:LYS137 5.0 41.3 1.0

Manganese binding site 2 out of 2 in the Paorn Oligoribonuclease D11A Mutant with Substrate Pgpg Complex Structure


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Paorn Oligoribonuclease D11A Mutant with Substrate Pgpg Complex Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn203 b:103.0 occ:1.00 NH1 A:ARG129 2.8 73.7 1.0 OH A:TYR128 3.4 52.2 1.0 CZ A:ARG129 3.9 70.3 1.0 CE1 A:TYR128 4.0 41.0 1.0 NZ B:LYS137 4.1 67.5 1.0 CZ A:TYR128 4.2 47.2 1.0 NH2 A:ARG129 4.3 71.3 1.0 CE B:LYS137 4.7 61.0 1.0

J.Zhang, Q.Zhang, M.Bartlam. Paorn Oligoribonuclease D11A Mutant with Substrate Pgpg Complex Structure To Be Published.