Manganese in PDB 7v1f: Crystal Structure of Omsk Hemorrhagic Fever Virus NS5 Mtase (in Complex with Sam and Gtp)

Enzymatic activity of Crystal Structure of Omsk Hemorrhagic Fever Virus NS5 Mtase (in Complex with Sam and Gtp)

All present enzymatic activity of Crystal Structure of Omsk Hemorrhagic Fever Virus NS5 Mtase (in Complex with Sam and Gtp):
3.4.21.91; 3.6.1.15; 3.6.4.13;

Protein crystallography data

The structure of Crystal Structure of Omsk Hemorrhagic Fever Virus NS5 Mtase (in Complex with Sam and Gtp), PDB code: 7v1f was solved by H.Jia, P.Gong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	34.79 / 2.00
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	34.797, 88.059, 42.664, 90, 90.75, 90
*R / R_free (%)*	17.2 / 20.6

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Omsk Hemorrhagic Fever Virus NS5 Mtase (in Complex with Sam and Gtp) (pdb code 7v1f). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Omsk Hemorrhagic Fever Virus NS5 Mtase (in Complex with Sam and Gtp), PDB code: 7v1f:

Manganese binding site 1 out of 1 in 7v1f

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Manganese Binding Sites List in 7v1f

Manganese binding site 1 out of 1 in the Crystal Structure of Omsk Hemorrhagic Fever Virus NS5 Mtase (in Complex with Sam and Gtp)

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Omsk Hemorrhagic Fever Virus NS5 Mtase (in Complex with Sam and Gtp) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn305 b:48.6 occ:0.73	O1A	A:GTP301	2.4	47.7	0.8
	O2B	A:GTP301	2.9	58.9	0.8
	O3G	A:GTP301	3.1	50.9	0.8
	O2G	A:GTP301	3.4	56.0	0.8
	PG	A:GTP301	3.7	57.9	0.8
	PA	A:GTP301	3.7	43.0	0.8
	PB	A:GTP301	3.8	47.0	0.8
	O3A	A:GTP301	4.0	42.1	0.8
	O3B	A:GTP301	4.1	46.2	0.8
	CE2	A:PHE24	4.4	33.5	1.0
	CZ	A:PHE24	4.5	28.6	1.0
	O5'	A:GTP301	4.6	41.5	0.8
	N7	A:GTP301	4.7	31.6	0.8
	O2A	A:GTP301	4.8	43.9	0.8
	C8	A:GTP301	4.9	41.6	0.8

Reference:

H.Jia, Y.Zhong, C.Peng, P.Gong. Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal A Gmp-Arginine Adduct. J.Virol. V. 96 41822 2022.
ISSN: ESSN 1098-5514
PubMed: 35758665
DOI: 10.1128/JVI.00418-22

Page generated: Sun Oct 6 10:57:52 2024

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