Manganese in PDB 7twe: Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to 2-Oxo-Glutaric Acid

The structure of Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to 2-Oxo-Glutaric Acid, PDB code: 7twe was solved by Y.Kim, G.Chhor, M.Endres, G.Babnigg, O.Schneewind, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.33 / 2.41
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.426, 54.054, 148.29, 90, 92.97, 90
R / Rfree (%)	19.8 / 23.6

The binding sites of Manganese atom in the Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to 2-Oxo-Glutaric Acid (pdb code 7twe). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to 2-Oxo-Glutaric Acid, PDB code: 7twe:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to 2-Oxo-Glutaric Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to 2-Oxo-Glutaric Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:24.3 occ:1.00 O1 A:AKG502 2.0 28.4 1.0 NE2 A:HIS340 2.1 24.6 1.0 NE2 A:HIS200 2.1 24.8 1.0 OD2 A:ASP202 2.2 32.2 1.0 O A:HOH626 2.3 22.8 1.0 O5 A:AKG502 2.6 31.1 1.0 C1 A:AKG502 2.9 37.8 1.0 C2 A:AKG502 3.0 37.6 1.0 CE1 A:HIS340 3.1 23.8 1.0 CE1 A:HIS200 3.1 21.9 1.0 CG A:ASP202 3.1 28.8 1.0 CD2 A:HIS200 3.1 22.1 1.0 CD2 A:HIS340 3.1 23.5 1.0 OD1 A:ASP202 3.3 25.2 1.0 O2 A:AKG502 4.1 38.8 1.0 ND1 A:HIS200 4.2 20.2 1.0 ND1 A:HIS340 4.2 23.9 1.0 CG A:HIS200 4.2 18.4 1.0 CG A:HIS340 4.2 20.1 1.0 C3 A:AKG502 4.4 38.4 1.0 NE2 A:GLN256 4.5 31.8 1.0 CB A:ASP202 4.5 23.5 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to 2-Oxo-Glutaric Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to 2-Oxo-Glutaric Acid within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn501 b:22.2 occ:1.00 O2 B:AKG502 2.0 25.6 1.0 OD2 B:ASP202 2.1 33.9 1.0 NE2 B:HIS340 2.1 24.4 1.0 O5 B:AKG502 2.2 28.5 1.0 NE2 B:HIS200 2.3 21.6 1.0 C2 B:AKG502 2.7 35.7 1.0 O B:HOH634 2.7 39.0 1.0 C1 B:AKG502 2.7 36.9 1.0 CG B:ASP202 3.1 34.7 1.0 CE1 B:HIS340 3.1 21.8 1.0 CD2 B:HIS340 3.2 20.1 1.0 CD2 B:HIS200 3.2 21.6 1.0 CE1 B:HIS200 3.3 25.2 1.0 OD1 B:ASP202 3.3 31.6 1.0 O1 B:AKG502 3.9 38.4 1.0 C3 B:AKG502 4.1 33.2 1.0 NE2 B:GLN256 4.2 33.7 1.0 ND1 B:HIS340 4.2 25.7 1.0 CG B:HIS340 4.3 19.3 1.0 ND1 B:HIS200 4.3 26.8 1.0 CG B:HIS200 4.4 19.4 1.0 CB B:ASP202 4.5 21.8 1.0 OE1 B:GLN256 4.9 33.4 1.0

Y.Kim, G.Chhor, M.Endres, G.Babnigg, O.Schneewind, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to 2-Oxo-Glutaric Acid To Be Published.