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Manganese in PDB 7tcl: Crystal Structure of P.Isnb Complexed with Tyrosine Isonitrile

Protein crystallography data

The structure of Crystal Structure of P.Isnb Complexed with Tyrosine Isonitrile, PDB code: 7tcl was solved by W.Kim, Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.85 / 1.97
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.868, 58.375, 102.589, 90, 90, 90
R / Rfree (%) 18.2 / 21.2

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of P.Isnb Complexed with Tyrosine Isonitrile (pdb code 7tcl). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of P.Isnb Complexed with Tyrosine Isonitrile, PDB code: 7tcl:

Manganese binding site 1 out of 1 in 7tcl

Go back to Manganese Binding Sites List in 7tcl
Manganese binding site 1 out of 1 in the Crystal Structure of P.Isnb Complexed with Tyrosine Isonitrile


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of P.Isnb Complexed with Tyrosine Isonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Mn301

b:25.0
occ:1.00
NE2 X:HIS250 2.2 20.3 1.0
OD1 X:ASP103 2.2 18.8 1.0
O X:HOH451 2.3 22.9 1.0
NE2 X:HIS101 2.3 22.5 1.0
O X:HOH459 2.4 29.5 1.0
O X:HOH540 2.4 28.7 1.0
CE1 X:HIS250 3.0 21.1 1.0
CG X:ASP103 3.2 21.1 1.0
CE1 X:HIS101 3.2 24.6 1.0
CD2 X:HIS250 3.3 18.4 1.0
CD2 X:HIS101 3.3 23.7 1.0
OD2 X:ASP103 3.4 20.2 1.0
O X:HOH542 4.1 39.2 1.0
ND1 X:HIS250 4.1 20.1 1.0
CG X:HIS250 4.3 18.2 1.0
ND1 X:HIS101 4.3 23.1 1.0
CG X:HIS101 4.4 23.4 1.0
CB X:ASP103 4.5 19.5 1.0
C06 X:I3J305 4.6 43.2 1.0
O13 X:I3J305 4.7 43.4 1.0
NH1 X:ARG265 4.8 26.4 1.0
CA X:ASP103 4.9 21.9 1.0
O X:HOH548 4.9 47.2 1.0
CE X:MET98 5.0 49.5 1.0

Reference:

W.Kim, T.Y.Chen, L.Cha, G.Zhou, K.Xing, N.K.Canty, Y.Zhang, W.C.Chang. Elucidation of Divergent Desaturation Pathways in the Formation of Vinyl Isonitrile and Isocyanoacrylate. Nat Commun V. 13 5343 2022.
ISSN: ESSN 2041-1723
PubMed: 36097268
DOI: 10.1038/S41467-022-32870-4
Page generated: Sun Oct 6 10:35:45 2024

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