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Manganese in PDB 7rcv: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;

Other elements in 7rcv:

The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Magnesium (Mg) 70 atoms
Iron (Fe) 6 atoms
Calcium (Ca) 8 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 (pdb code 7rcv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, PDB code: 7rcv:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 7rcv

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Manganese binding site 1 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.9
occ:1.00
 MN1 A:OEX401 0.0 8.9 1.0
O1 A:OEX401 2.1 8.9 1.0
NE2 A:HIS332 2.2 4.6 1.0
O3 A:OEX401 2.3 8.9 1.0
OD2 A:ASP342 2.3 7.3 1.0
OE2 A:GLU189 2.4 4.2 1.0
O5 A:OEX401 2.6 8.9 1.0
CE1 A:HIS332 3.0 4.6 1.0
CD A:GLU189 3.0 4.2 1.0
MN2 A:OEX401 3.1 8.9 1.0
OE1 A:GLU189 3.2 4.2 1.0
CG A:ASP342 3.2 7.3 1.0
CD2 A:HIS332 3.3 4.6 1.0
OD1 A:ASP342 3.4 7.3 1.0
MN3 A:OEX401 3.4 8.9 1.0
O A:HOH512 3.7 9.9 1.0
CA1 A:OEX401 3.9 8.9 1.0
NE2 A:HIS337 3.9 6.2 1.0
OE2 A:GLU329 4.1 6.0 1.0
O2 A:OEX401 4.1 8.9 1.0
ND1 A:HIS332 4.1 4.6 1.0
CG A:GLU189 4.3 4.2 1.0
OE1 A:GLU333 4.3 6.4 1.0
CG A:HIS332 4.3 4.6 1.0
CE1 A:HIS337 4.4 6.2 1.0
O A:ALA344 4.6 9.1 1.0
O A:HOH517 4.6 8.7 1.0
CB A:ASP342 4.6 7.3 1.0
OE1 C:GLU341 4.7 5.8 1.0
CG1 A:VAL185 4.7 2.1 1.0
CD A:GLU333 4.8 6.4 1.0
OE1 A:GLU329 4.8 6.0 1.0
OE2 A:GLU333 4.8 6.4 1.0
CD A:GLU329 4.9 6.0 1.0
OE2 C:GLU341 5.0 5.8 1.0

Manganese binding site 2 out of 8 in 7rcv

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Manganese binding site 2 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.9
occ:1.00
 MN2 A:OEX401 0.0 8.9 1.0
O3 A:OEX401 1.9 8.9 1.0
OD1 A:ASP342 2.2 7.3 1.0
OE1 C:GLU341 2.3 5.8 1.0
O A:ALA344 2.3 9.1 1.0
O2 A:OEX401 2.4 8.9 1.0
O1 A:OEX401 2.4 8.9 1.0
C A:ALA344 2.9 9.1 1.0
MN3 A:OEX401 3.0 8.9 1.0
MN1 A:OEX401 3.1 8.9 1.0
CD C:GLU341 3.1 5.8 1.0
CG A:ASP342 3.2 7.3 1.0
OE2 C:GLU341 3.3 5.8 1.0
O C:HOH659 3.5 9.9 1.0
OD2 A:ASP342 3.5 7.3 1.0
CA1 A:OEX401 3.6 8.9 1.0
NE2 A:HIS337 3.8 6.2 1.0
O5 A:OEX401 3.9 8.9 1.0
O A:HOH512 4.0 9.9 1.0
CA A:ALA344 4.0 9.1 1.0
CB A:ALA344 4.2 9.1 1.0
CD2 A:HIS337 4.3 6.2 1.0
N A:ALA344 4.4 9.1 1.0
CG C:GLU341 4.5 5.8 1.0
CB A:ASP342 4.6 7.3 1.0
OE2 A:GLU189 4.6 4.2 1.0
O4 A:OEX401 4.8 8.9 1.0
C A:ASP342 4.8 7.3 1.0
CA A:ASP342 4.8 7.3 1.0
CB C:GLU341 4.8 5.8 1.0
NE2 A:HIS332 4.9 4.6 1.0
OE1 A:GLU333 4.9 6.4 1.0
O A:HOH517 4.9 8.7 1.0
CE1 A:HIS337 5.0 6.2 1.0
NH2 C:ARG344 5.0 3.8 1.0
O A:ASP342 5.0 7.3 1.0
C A:LEU343 5.0 8.2 1.0

Manganese binding site 3 out of 8 in 7rcv

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Manganese binding site 3 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.9
occ:1.00
 MN3 A:OEX401 0.0 8.9 1.0
O3 A:OEX401 2.1 8.9 1.0
O4 A:OEX401 2.2 8.9 1.0
O2 A:OEX401 2.2 8.9 1.0
OE1 A:GLU333 2.3 6.4 1.0
OE2 C:GLU341 2.3 5.8 1.0
O5 A:OEX401 2.7 8.9 1.0
MN2 A:OEX401 3.0 8.9 1.0
MN4 A:OEX401 3.1 8.9 1.0
CD A:GLU333 3.2 6.4 1.0
CD C:GLU341 3.3 5.8 1.0
OE2 A:GLU333 3.4 6.4 1.0
MN1 A:OEX401 3.4 8.9 1.0
CA1 A:OEX401 3.4 8.9 1.0
OE1 C:GLU341 3.5 5.8 1.0
O C:HOH610 3.6 8.2 1.0
O1 A:OEX401 3.9 8.9 1.0
NH2 C:ARG344 4.0 3.8 1.0
O A:HOH508 4.1 8.0 1.0
NE2 A:HIS337 4.1 6.2 1.0
OD1 A:ASP170 4.2 3.1 1.0
NE2 A:HIS332 4.3 4.6 1.0
OD2 A:ASP170 4.5 3.1 1.0
CG A:GLU333 4.6 6.4 1.0
CG C:GLU341 4.6 5.8 1.0
CE1 A:HIS337 4.8 6.2 1.0
CD2 A:HIS332 4.8 4.6 1.0
CG A:ASP170 4.8 3.1 1.0
OD1 A:ASP342 4.8 7.3 1.0
CB A:GLU333 4.9 6.4 1.0

Manganese binding site 4 out of 8 in 7rcv

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Manganese binding site 4 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.9
occ:1.00
 MN4 A:OEX401 0.0 8.9 1.0
O4 A:OEX401 2.1 8.9 1.0
OE2 A:GLU333 2.3 6.4 1.0
OD1 A:ASP170 2.3 3.1 1.0
O A:HOH558 2.6 11.7 1.0
O A:HOH594 2.6 10.9 1.0
O5 A:OEX401 2.9 8.9 1.0
CD A:GLU333 3.1 6.4 1.0
MN3 A:OEX401 3.1 8.9 1.0
OE1 A:GLU333 3.3 6.4 1.0
CG A:ASP170 3.4 3.1 1.0
O A:HOH508 3.8 8.0 1.0
CA1 A:OEX401 3.9 8.9 1.0
OD2 A:ASP170 4.0 3.1 1.0
O2 A:OEX401 4.1 8.9 1.0
O A:SER169 4.3 2.5 1.0
O A:HOH568 4.4 11.0 1.0
O A:HOH610 4.4 6.5 1.0
CG A:GLU333 4.4 6.4 1.0
O A:HOH560 4.5 9.5 1.0
OD2 A:ASP61 4.5 8.1 1.0
CB A:ASP170 4.5 3.1 1.0
CA A:ASP170 4.6 3.1 1.0
NH2 C:ARG344 4.6 3.8 1.0
O A:HOH561 4.6 9.1 1.0
C A:SER169 4.8 2.5 1.0
O C:HOH610 5.0 8.2 1.0
N A:ASP170 5.0 3.1 1.0

Manganese binding site 5 out of 8 in 7rcv

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Manganese binding site 5 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.9
occ:1.00
 MN1 a:OEX401 0.0 8.9 1.0
O1 a:OEX401 2.1 8.9 1.0
NE2 a:HIS332 2.2 4.6 1.0
O3 a:OEX401 2.3 8.9 1.0
OD2 a:ASP342 2.3 7.3 1.0
OE2 a:GLU189 2.4 4.2 1.0
O5 a:OEX401 2.6 8.9 1.0
CE1 a:HIS332 3.0 4.6 1.0
CD a:GLU189 3.0 4.2 1.0
MN2 a:OEX401 3.1 8.9 1.0
OE1 a:GLU189 3.2 4.2 1.0
CG a:ASP342 3.2 7.3 1.0
CD2 a:HIS332 3.3 4.6 1.0
OD1 a:ASP342 3.4 7.3 1.0
MN3 a:OEX401 3.4 8.9 1.0
O a:HOH512 3.7 9.9 1.0
CA1 a:OEX401 3.9 8.9 1.0
NE2 a:HIS337 3.9 6.2 1.0
OE2 a:GLU329 4.1 6.0 1.0
O2 a:OEX401 4.1 8.9 1.0
ND1 a:HIS332 4.1 4.6 1.0
CG a:GLU189 4.3 4.2 1.0
OE1 a:GLU333 4.3 6.4 1.0
CG a:HIS332 4.3 4.6 1.0
CE1 a:HIS337 4.4 6.2 1.0
O a:ALA344 4.6 9.1 1.0
O a:HOH517 4.6 8.7 1.0
CB a:ASP342 4.6 7.3 1.0
OE1 c:GLU341 4.7 5.8 1.0
CG1 a:VAL185 4.7 2.1 1.0
CD a:GLU333 4.8 6.4 1.0
OE1 a:GLU329 4.8 6.0 1.0
OE2 a:GLU333 4.8 6.4 1.0
CD a:GLU329 4.9 6.0 1.0
OE2 c:GLU341 5.0 5.8 1.0

Manganese binding site 6 out of 8 in 7rcv

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Manganese binding site 6 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.9
occ:1.00
 MN2 a:OEX401 0.0 8.9 1.0
O3 a:OEX401 1.9 8.9 1.0
OD1 a:ASP342 2.2 7.3 1.0
OE1 c:GLU341 2.3 5.8 1.0
O a:ALA344 2.3 9.1 1.0
O2 a:OEX401 2.4 8.9 1.0
O1 a:OEX401 2.4 8.9 1.0
C a:ALA344 2.9 9.1 1.0
MN3 a:OEX401 3.0 8.9 1.0
MN1 a:OEX401 3.1 8.9 1.0
CD c:GLU341 3.1 5.8 1.0
CG a:ASP342 3.2 7.3 1.0
OE2 c:GLU341 3.3 5.8 1.0
O c:HOH659 3.5 9.9 1.0
OD2 a:ASP342 3.5 7.3 1.0
CA1 a:OEX401 3.6 8.9 1.0
NE2 a:HIS337 3.8 6.2 1.0
O5 a:OEX401 3.9 8.9 1.0
O a:HOH512 4.0 9.9 1.0
CA a:ALA344 4.0 9.1 1.0
CB a:ALA344 4.2 9.1 1.0
CD2 a:HIS337 4.3 6.2 1.0
N a:ALA344 4.4 9.1 1.0
CG c:GLU341 4.5 5.8 1.0
CB a:ASP342 4.6 7.3 1.0
OE2 a:GLU189 4.6 4.2 1.0
O4 a:OEX401 4.8 8.9 1.0
C a:ASP342 4.8 7.3 1.0
CA a:ASP342 4.8 7.3 1.0
CB c:GLU341 4.8 5.8 1.0
NE2 a:HIS332 4.9 4.6 1.0
OE1 a:GLU333 4.9 6.4 1.0
O a:HOH517 4.9 8.7 1.0
CE1 a:HIS337 5.0 6.2 1.0
NH2 c:ARG344 5.0 3.8 1.0
O a:ASP342 5.0 7.3 1.0
C a:LEU343 5.0 8.2 1.0

Manganese binding site 7 out of 8 in 7rcv

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Manganese binding site 7 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.9
occ:1.00
 MN3 a:OEX401 0.0 8.9 1.0
O3 a:OEX401 2.1 8.9 1.0
O4 a:OEX401 2.2 8.9 1.0
O2 a:OEX401 2.2 8.9 1.0
OE1 a:GLU333 2.3 6.4 1.0
OE2 c:GLU341 2.3 5.8 1.0
O5 a:OEX401 2.7 8.9 1.0
MN2 a:OEX401 3.0 8.9 1.0
MN4 a:OEX401 3.1 8.9 1.0
CD a:GLU333 3.2 6.4 1.0
CD c:GLU341 3.3 5.8 1.0
OE2 a:GLU333 3.4 6.4 1.0
MN1 a:OEX401 3.4 8.9 1.0
CA1 a:OEX401 3.4 8.9 1.0
OE1 c:GLU341 3.5 5.8 1.0
O c:HOH610 3.6 8.2 1.0
O1 a:OEX401 3.9 8.9 1.0
NH2 c:ARG344 4.0 3.8 1.0
O a:HOH508 4.1 8.0 1.0
NE2 a:HIS337 4.1 6.2 1.0
OD1 a:ASP170 4.2 3.1 1.0
NE2 a:HIS332 4.3 4.6 1.0
OD2 a:ASP170 4.5 3.1 1.0
CG a:GLU333 4.5 6.4 1.0
CG c:GLU341 4.6 5.8 1.0
CE1 a:HIS337 4.8 6.2 1.0
CD2 a:HIS332 4.8 4.6 1.0
CG a:ASP170 4.8 3.1 1.0
OD1 a:ASP342 4.8 7.3 1.0
CB a:GLU333 4.9 6.4 1.0

Manganese binding site 8 out of 8 in 7rcv

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Manganese binding site 8 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.9
occ:1.00
 MN4 a:OEX401 0.0 8.9 1.0
O4 a:OEX401 2.1 8.9 1.0
OE2 a:GLU333 2.3 6.4 1.0
OD1 a:ASP170 2.3 3.1 1.0
O a:HOH558 2.6 11.7 1.0
O a:HOH594 2.6 10.9 1.0
O5 a:OEX401 2.9 8.9 1.0
CD a:GLU333 3.1 6.4 1.0
MN3 a:OEX401 3.1 8.9 1.0
OE1 a:GLU333 3.3 6.4 1.0
CG a:ASP170 3.4 3.1 1.0
O a:HOH508 3.8 8.0 1.0
CA1 a:OEX401 3.9 8.9 1.0
OD2 a:ASP170 4.0 3.1 1.0
O2 a:OEX401 4.1 8.9 1.0
O a:SER169 4.3 2.5 1.0
O a:HOH568 4.4 11.0 1.0
O a:HOH610 4.4 6.5 1.0
CG a:GLU333 4.4 6.4 1.0
O a:HOH560 4.5 9.5 1.0
OD2 a:ASP61 4.5 8.1 1.0
CB a:ASP170 4.5 3.1 1.0
CA a:ASP170 4.6 3.1 1.0
NH2 c:ARG344 4.6 3.8 1.0
O a:HOH561 4.6 9.1 1.0
C a:SER169 4.8 2.5 1.0
O c:HOH610 5.0 8.2 1.0
N a:ASP170 5.0 3.1 1.0

Reference:

C.J.Gisriel, J.Wang, J.Liu, D.A.Flesher, K.M.Reiss, H.Huang, K.R.Yang, W.H.Armstrong, M.R.Gunner, V.S.Batista, R.J.Debus, G.W.Brudvig. High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
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