Atomistry » Manganese » PDB 7ohl-7sck » 7rcv
Atomistry »
  Manganese »
    PDB 7ohl-7sck »
      7rcv »

Manganese in PDB 7rcv: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;

Other elements in 7rcv:

The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Magnesium (Mg) 70 atoms
Iron (Fe) 6 atoms
Calcium (Ca) 8 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 (pdb code 7rcv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, PDB code: 7rcv:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 7rcv

Go back to Manganese Binding Sites List in 7rcv
Manganese binding site 1 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.9
occ:1.00
 MN1 A:OEX401 0.0 8.9 1.0
O1 A:OEX401 2.1 8.9 1.0
NE2 A:HIS332 2.2 4.6 1.0
O3 A:OEX401 2.3 8.9 1.0
OD2 A:ASP342 2.3 7.3 1.0
OE2 A:GLU189 2.4 4.2 1.0
O5 A:OEX401 2.6 8.9 1.0
CE1 A:HIS332 3.0 4.6 1.0
CD A:GLU189 3.0 4.2 1.0
MN2 A:OEX401 3.1 8.9 1.0
OE1 A:GLU189 3.2 4.2 1.0
CG A:ASP342 3.2 7.3 1.0
CD2 A:HIS332 3.3 4.6 1.0
OD1 A:ASP342 3.4 7.3 1.0
MN3 A:OEX401 3.4 8.9 1.0
O A:HOH512 3.7 9.9 1.0
CA1 A:OEX401 3.9 8.9 1.0
NE2 A:HIS337 3.9 6.2 1.0
OE2 A:GLU329 4.1 6.0 1.0
O2 A:OEX401 4.1 8.9 1.0
ND1 A:HIS332 4.1 4.6 1.0
CG A:GLU189 4.3 4.2 1.0
OE1 A:GLU333 4.3 6.4 1.0
CG A:HIS332 4.3 4.6 1.0
CE1 A:HIS337 4.4 6.2 1.0
O A:ALA344 4.6 9.1 1.0
O A:HOH517 4.6 8.7 1.0
CB A:ASP342 4.6 7.3 1.0
OE1 C:GLU341 4.7 5.8 1.0
CG1 A:VAL185 4.7 2.1 1.0
CD A:GLU333 4.8 6.4 1.0
OE1 A:GLU329 4.8 6.0 1.0
OE2 A:GLU333 4.8 6.4 1.0
CD A:GLU329 4.9 6.0 1.0
OE2 C:GLU341 5.0 5.8 1.0

Manganese binding site 2 out of 8 in 7rcv

Go back to Manganese Binding Sites List in 7rcv
Manganese binding site 2 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.9
occ:1.00
 MN2 A:OEX401 0.0 8.9 1.0
O3 A:OEX401 1.9 8.9 1.0
OD1 A:ASP342 2.2 7.3 1.0
OE1 C:GLU341 2.3 5.8 1.0
O A:ALA344 2.3 9.1 1.0
O2 A:OEX401 2.4 8.9 1.0
O1 A:OEX401 2.4 8.9 1.0
C A:ALA344 2.9 9.1 1.0
MN3 A:OEX401 3.0 8.9 1.0
MN1 A:OEX401 3.1 8.9 1.0
CD C:GLU341 3.1 5.8 1.0
CG A:ASP342 3.2 7.3 1.0
OE2 C:GLU341 3.3 5.8 1.0
O C:HOH659 3.5 9.9 1.0
OD2 A:ASP342 3.5 7.3 1.0
CA1 A:OEX401 3.6 8.9 1.0
NE2 A:HIS337 3.8 6.2 1.0
O5 A:OEX401 3.9 8.9 1.0
O A:HOH512 4.0 9.9 1.0
CA A:ALA344 4.0 9.1 1.0
CB A:ALA344 4.2 9.1 1.0
CD2 A:HIS337 4.3 6.2 1.0
N A:ALA344 4.4 9.1 1.0
CG C:GLU341 4.5 5.8 1.0
CB A:ASP342 4.6 7.3 1.0
OE2 A:GLU189 4.6 4.2 1.0
O4 A:OEX401 4.8 8.9 1.0
C A:ASP342 4.8 7.3 1.0
CA A:ASP342 4.8 7.3 1.0
CB C:GLU341 4.8 5.8 1.0
NE2 A:HIS332 4.9 4.6 1.0
OE1 A:GLU333 4.9 6.4 1.0
O A:HOH517 4.9 8.7 1.0
CE1 A:HIS337 5.0 6.2 1.0
NH2 C:ARG344 5.0 3.8 1.0
O A:ASP342 5.0 7.3 1.0
C A:LEU343 5.0 8.2 1.0

Manganese binding site 3 out of 8 in 7rcv

Go back to Manganese Binding Sites List in 7rcv
Manganese binding site 3 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.9
occ:1.00
 MN3 A:OEX401 0.0 8.9 1.0
O3 A:OEX401 2.1 8.9 1.0
O4 A:OEX401 2.2 8.9 1.0
O2 A:OEX401 2.2 8.9 1.0
OE1 A:GLU333 2.3 6.4 1.0
OE2 C:GLU341 2.3 5.8 1.0
O5 A:OEX401 2.7 8.9 1.0
MN2 A:OEX401 3.0 8.9 1.0
MN4 A:OEX401 3.1 8.9 1.0
CD A:GLU333 3.2 6.4 1.0
CD C:GLU341 3.3 5.8 1.0
OE2 A:GLU333 3.4 6.4 1.0
MN1 A:OEX401 3.4 8.9 1.0
CA1 A:OEX401 3.4 8.9 1.0
OE1 C:GLU341 3.5 5.8 1.0
O C:HOH610 3.6 8.2 1.0
O1 A:OEX401 3.9 8.9 1.0
NH2 C:ARG344 4.0 3.8 1.0
O A:HOH508 4.1 8.0 1.0
NE2 A:HIS337 4.1 6.2 1.0
OD1 A:ASP170 4.2 3.1 1.0
NE2 A:HIS332 4.3 4.6 1.0
OD2 A:ASP170 4.5 3.1 1.0
CG A:GLU333 4.6 6.4 1.0
CG C:GLU341 4.6 5.8 1.0
CE1 A:HIS337 4.8 6.2 1.0
CD2 A:HIS332 4.8 4.6 1.0
CG A:ASP170 4.8 3.1 1.0
OD1 A:ASP342 4.8 7.3 1.0
CB A:GLU333 4.9 6.4 1.0

Manganese binding site 4 out of 8 in 7rcv

Go back to Manganese Binding Sites List in 7rcv
Manganese binding site 4 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.9
occ:1.00
 MN4 A:OEX401 0.0 8.9 1.0
O4 A:OEX401 2.1 8.9 1.0
OE2 A:GLU333 2.3 6.4 1.0
OD1 A:ASP170 2.3 3.1 1.0
O A:HOH558 2.6 11.7 1.0
O A:HOH594 2.6 10.9 1.0
O5 A:OEX401 2.9 8.9 1.0
CD A:GLU333 3.1 6.4 1.0
MN3 A:OEX401 3.1 8.9 1.0
OE1 A:GLU333 3.3 6.4 1.0
CG A:ASP170 3.4 3.1 1.0
O A:HOH508 3.8 8.0 1.0
CA1 A:OEX401 3.9 8.9 1.0
OD2 A:ASP170 4.0 3.1 1.0
O2 A:OEX401 4.1 8.9 1.0
O A:SER169 4.3 2.5 1.0
O A:HOH568 4.4 11.0 1.0
O A:HOH610 4.4 6.5 1.0
CG A:GLU333 4.4 6.4 1.0
O A:HOH560 4.5 9.5 1.0
OD2 A:ASP61 4.5 8.1 1.0
CB A:ASP170 4.5 3.1 1.0
CA A:ASP170 4.6 3.1 1.0
NH2 C:ARG344 4.6 3.8 1.0
O A:HOH561 4.6 9.1 1.0
C A:SER169 4.8 2.5 1.0
O C:HOH610 5.0 8.2 1.0
N A:ASP170 5.0 3.1 1.0

Manganese binding site 5 out of 8 in 7rcv

Go back to Manganese Binding Sites List in 7rcv
Manganese binding site 5 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.9
occ:1.00
 MN1 a:OEX401 0.0 8.9 1.0
O1 a:OEX401 2.1 8.9 1.0
NE2 a:HIS332 2.2 4.6 1.0
O3 a:OEX401 2.3 8.9 1.0
OD2 a:ASP342 2.3 7.3 1.0
OE2 a:GLU189 2.4 4.2 1.0
O5 a:OEX401 2.6 8.9 1.0
CE1 a:HIS332 3.0 4.6 1.0
CD a:GLU189 3.0 4.2 1.0
MN2 a:OEX401 3.1 8.9 1.0
OE1 a:GLU189 3.2 4.2 1.0
CG a:ASP342 3.2 7.3 1.0
CD2 a:HIS332 3.3 4.6 1.0
OD1 a:ASP342 3.4 7.3 1.0
MN3 a:OEX401 3.4 8.9 1.0
O a:HOH512 3.7 9.9 1.0
CA1 a:OEX401 3.9 8.9 1.0
NE2 a:HIS337 3.9 6.2 1.0
OE2 a:GLU329 4.1 6.0 1.0
O2 a:OEX401 4.1 8.9 1.0
ND1 a:HIS332 4.1 4.6 1.0
CG a:GLU189 4.3 4.2 1.0
OE1 a:GLU333 4.3 6.4 1.0
CG a:HIS332 4.3 4.6 1.0
CE1 a:HIS337 4.4 6.2 1.0
O a:ALA344 4.6 9.1 1.0
O a:HOH517 4.6 8.7 1.0
CB a:ASP342 4.6 7.3 1.0
OE1 c:GLU341 4.7 5.8 1.0
CG1 a:VAL185 4.7 2.1 1.0
CD a:GLU333 4.8 6.4 1.0
OE1 a:GLU329 4.8 6.0 1.0
OE2 a:GLU333 4.8 6.4 1.0
CD a:GLU329 4.9 6.0 1.0
OE2 c:GLU341 5.0 5.8 1.0

Manganese binding site 6 out of 8 in 7rcv

Go back to Manganese Binding Sites List in 7rcv
Manganese binding site 6 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.9
occ:1.00
 MN2 a:OEX401 0.0 8.9 1.0
O3 a:OEX401 1.9 8.9 1.0
OD1 a:ASP342 2.2 7.3 1.0
OE1 c:GLU341 2.3 5.8 1.0
O a:ALA344 2.3 9.1 1.0
O2 a:OEX401 2.4 8.9 1.0
O1 a:OEX401 2.4 8.9 1.0
C a:ALA344 2.9 9.1 1.0
MN3 a:OEX401 3.0 8.9 1.0
MN1 a:OEX401 3.1 8.9 1.0
CD c:GLU341 3.1 5.8 1.0
CG a:ASP342 3.2 7.3 1.0
OE2 c:GLU341 3.3 5.8 1.0
O c:HOH659 3.5 9.9 1.0
OD2 a:ASP342 3.5 7.3 1.0
CA1 a:OEX401 3.6 8.9 1.0
NE2 a:HIS337 3.8 6.2 1.0
O5 a:OEX401 3.9 8.9 1.0
O a:HOH512 4.0 9.9 1.0
CA a:ALA344 4.0 9.1 1.0
CB a:ALA344 4.2 9.1 1.0
CD2 a:HIS337 4.3 6.2 1.0
N a:ALA344 4.4 9.1 1.0
CG c:GLU341 4.5 5.8 1.0
CB a:ASP342 4.6 7.3 1.0
OE2 a:GLU189 4.6 4.2 1.0
O4 a:OEX401 4.8 8.9 1.0
C a:ASP342 4.8 7.3 1.0
CA a:ASP342 4.8 7.3 1.0
CB c:GLU341 4.8 5.8 1.0
NE2 a:HIS332 4.9 4.6 1.0
OE1 a:GLU333 4.9 6.4 1.0
O a:HOH517 4.9 8.7 1.0
CE1 a:HIS337 5.0 6.2 1.0
NH2 c:ARG344 5.0 3.8 1.0
O a:ASP342 5.0 7.3 1.0
C a:LEU343 5.0 8.2 1.0

Manganese binding site 7 out of 8 in 7rcv

Go back to Manganese Binding Sites List in 7rcv
Manganese binding site 7 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.9
occ:1.00
 MN3 a:OEX401 0.0 8.9 1.0
O3 a:OEX401 2.1 8.9 1.0
O4 a:OEX401 2.2 8.9 1.0
O2 a:OEX401 2.2 8.9 1.0
OE1 a:GLU333 2.3 6.4 1.0
OE2 c:GLU341 2.3 5.8 1.0
O5 a:OEX401 2.7 8.9 1.0
MN2 a:OEX401 3.0 8.9 1.0
MN4 a:OEX401 3.1 8.9 1.0
CD a:GLU333 3.2 6.4 1.0
CD c:GLU341 3.3 5.8 1.0
OE2 a:GLU333 3.4 6.4 1.0
MN1 a:OEX401 3.4 8.9 1.0
CA1 a:OEX401 3.4 8.9 1.0
OE1 c:GLU341 3.5 5.8 1.0
O c:HOH610 3.6 8.2 1.0
O1 a:OEX401 3.9 8.9 1.0
NH2 c:ARG344 4.0 3.8 1.0
O a:HOH508 4.1 8.0 1.0
NE2 a:HIS337 4.1 6.2 1.0
OD1 a:ASP170 4.2 3.1 1.0
NE2 a:HIS332 4.3 4.6 1.0
OD2 a:ASP170 4.5 3.1 1.0
CG a:GLU333 4.5 6.4 1.0
CG c:GLU341 4.6 5.8 1.0
CE1 a:HIS337 4.8 6.2 1.0
CD2 a:HIS332 4.8 4.6 1.0
CG a:ASP170 4.8 3.1 1.0
OD1 a:ASP342 4.8 7.3 1.0
CB a:GLU333 4.9 6.4 1.0

Manganese binding site 8 out of 8 in 7rcv

Go back to Manganese Binding Sites List in 7rcv
Manganese binding site 8 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.9
occ:1.00
 MN4 a:OEX401 0.0 8.9 1.0
O4 a:OEX401 2.1 8.9 1.0
OE2 a:GLU333 2.3 6.4 1.0
OD1 a:ASP170 2.3 3.1 1.0
O a:HOH558 2.6 11.7 1.0
O a:HOH594 2.6 10.9 1.0
O5 a:OEX401 2.9 8.9 1.0
CD a:GLU333 3.1 6.4 1.0
MN3 a:OEX401 3.1 8.9 1.0
OE1 a:GLU333 3.3 6.4 1.0
CG a:ASP170 3.4 3.1 1.0
O a:HOH508 3.8 8.0 1.0
CA1 a:OEX401 3.9 8.9 1.0
OD2 a:ASP170 4.0 3.1 1.0
O2 a:OEX401 4.1 8.9 1.0
O a:SER169 4.3 2.5 1.0
O a:HOH568 4.4 11.0 1.0
O a:HOH610 4.4 6.5 1.0
CG a:GLU333 4.4 6.4 1.0
O a:HOH560 4.5 9.5 1.0
OD2 a:ASP61 4.5 8.1 1.0
CB a:ASP170 4.5 3.1 1.0
CA a:ASP170 4.6 3.1 1.0
NH2 c:ARG344 4.6 3.8 1.0
O a:HOH561 4.6 9.1 1.0
C a:SER169 4.8 2.5 1.0
O c:HOH610 5.0 8.2 1.0
N a:ASP170 5.0 3.1 1.0

Reference:

C.J.Gisriel, J.Wang, J.Liu, D.A.Flesher, K.M.Reiss, H.Huang, K.R.Yang, W.H.Armstrong, M.R.Gunner, V.S.Batista, R.J.Debus, G.W.Brudvig. High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
Page generated: Sun Oct 6 10:28:14 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy