Manganese in PDB 7qpr: Structure of Full Length Spot
Enzymatic activity of Structure of Full Length Spot
All present enzymatic activity of Structure of Full Length Spot:
2.7.6.5;
Protein crystallography data
The structure of Structure of Full Length Spot, PDB code: 7qpr
was solved by
A.Garcia-Pino,
H.Tamman,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.88 /
2.51
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
128.791,
133.761,
211.328,
90,
90,
90
|
R / Rfree (%)
|
22.1 /
25.8
|
Other elements in 7qpr:
The structure of Structure of Full Length Spot also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the Structure of Full Length Spot
(pdb code 7qpr). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the
Structure of Full Length Spot, PDB code: 7qpr:
Jump to Manganese binding site number:
1;
2;
3;
4;
Manganese binding site 1 out
of 4 in 7qpr
Go back to
Manganese Binding Sites List in 7qpr
Manganese binding site 1 out
of 4 in the Structure of Full Length Spot
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Structure of Full Length Spot within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn801
b:121.8
occ:1.00
|
O1C
|
A:G4P803
|
2.4
|
155.4
|
1.0
|
OD2
|
A:ASP79
|
2.6
|
74.5
|
1.0
|
OD1
|
A:ASP143
|
2.6
|
58.3
|
1.0
|
NE2
|
A:HIS54
|
2.8
|
57.3
|
1.0
|
NE2
|
A:HIS78
|
2.8
|
68.0
|
1.0
|
CG
|
A:ASP79
|
3.3
|
72.1
|
1.0
|
OD1
|
A:ASP79
|
3.3
|
72.9
|
1.0
|
CD2
|
A:HIS54
|
3.4
|
56.3
|
1.0
|
CE1
|
A:HIS78
|
3.6
|
67.7
|
1.0
|
CG
|
A:ASP143
|
3.7
|
56.6
|
1.0
|
OH
|
A:TYR51
|
3.7
|
76.9
|
1.0
|
PC
|
A:G4P803
|
3.8
|
155.3
|
1.0
|
CE1
|
A:HIS54
|
3.9
|
57.5
|
1.0
|
CD2
|
A:HIS78
|
3.9
|
66.8
|
1.0
|
O2'
|
A:G4P803
|
3.9
|
154.5
|
1.0
|
OD2
|
A:ASP143
|
4.1
|
58.9
|
1.0
|
O2C
|
A:G4P803
|
4.2
|
155.4
|
1.0
|
ND2
|
A:ASN147
|
4.3
|
58.4
|
1.0
|
CG
|
A:HIS54
|
4.5
|
55.4
|
1.0
|
O3'
|
A:G4P803
|
4.7
|
155.1
|
1.0
|
O
|
A:HOH922
|
4.7
|
53.2
|
1.0
|
ND1
|
A:HIS54
|
4.8
|
57.0
|
1.0
|
CB
|
A:ASP79
|
4.8
|
67.0
|
1.0
|
O
|
A:HOH935
|
4.8
|
65.8
|
1.0
|
CZ
|
A:TYR51
|
4.8
|
75.5
|
1.0
|
O3C
|
A:G4P803
|
4.8
|
155.3
|
1.0
|
ND1
|
A:HIS78
|
4.8
|
67.1
|
1.0
|
OD1
|
A:ASN147
|
4.8
|
59.9
|
1.0
|
CG
|
A:HIS78
|
4.9
|
65.4
|
1.0
|
CB
|
A:ASP143
|
4.9
|
49.8
|
1.0
|
|
Manganese binding site 2 out
of 4 in 7qpr
Go back to
Manganese Binding Sites List in 7qpr
Manganese binding site 2 out
of 4 in the Structure of Full Length Spot
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Structure of Full Length Spot within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn801
b:133.2
occ:1.00
|
OD1
|
B:ASP143
|
2.3
|
54.7
|
1.0
|
OD2
|
B:ASP79
|
2.6
|
94.7
|
1.0
|
NE2
|
B:HIS54
|
2.7
|
70.7
|
1.0
|
NE2
|
B:HIS78
|
2.8
|
81.5
|
1.0
|
CD2
|
B:HIS54
|
3.3
|
69.8
|
1.0
|
CG
|
B:ASP79
|
3.4
|
92.5
|
1.0
|
OD1
|
B:ASP79
|
3.4
|
93.7
|
1.0
|
CG
|
B:ASP143
|
3.5
|
53.9
|
1.0
|
O2'
|
B:G4P803
|
3.5
|
192.0
|
1.0
|
CE1
|
B:HIS78
|
3.6
|
81.5
|
1.0
|
CE1
|
B:HIS54
|
3.7
|
70.8
|
1.0
|
O1C
|
B:G4P803
|
3.8
|
191.4
|
1.0
|
CD2
|
B:HIS78
|
3.8
|
80.5
|
1.0
|
OH
|
B:TYR51
|
3.9
|
91.4
|
1.0
|
OD2
|
B:ASP143
|
3.9
|
56.0
|
1.0
|
ND2
|
B:ASN147
|
4.3
|
67.9
|
1.0
|
CG
|
B:HIS54
|
4.4
|
69.1
|
1.0
|
O3'
|
B:G4P803
|
4.6
|
191.7
|
1.0
|
ND1
|
B:HIS54
|
4.7
|
70.6
|
1.0
|
CB
|
B:ASP143
|
4.7
|
49.4
|
1.0
|
ND1
|
B:HIS78
|
4.7
|
81.0
|
1.0
|
OD1
|
B:ASN147
|
4.7
|
69.2
|
1.0
|
PC
|
B:G4P803
|
4.8
|
191.5
|
1.0
|
CB
|
B:ASP79
|
4.8
|
86.9
|
1.0
|
CG
|
B:HIS78
|
4.9
|
79.4
|
1.0
|
C2'
|
B:G4P803
|
4.9
|
191.9
|
1.0
|
CG
|
B:ASN147
|
5.0
|
67.6
|
1.0
|
CZ
|
B:TYR51
|
5.0
|
90.2
|
1.0
|
|
Manganese binding site 3 out
of 4 in 7qpr
Go back to
Manganese Binding Sites List in 7qpr
Manganese binding site 3 out
of 4 in the Structure of Full Length Spot
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Structure of Full Length Spot within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn801
b:124.4
occ:1.00
|
OD1
|
C:ASP143
|
2.4
|
59.4
|
1.0
|
NE2
|
C:HIS78
|
2.7
|
73.9
|
1.0
|
NE2
|
C:HIS54
|
2.7
|
61.2
|
1.0
|
O
|
C:HOH932
|
2.9
|
121.7
|
1.0
|
OD2
|
C:ASP79
|
3.0
|
80.6
|
1.0
|
CD2
|
C:HIS54
|
3.3
|
60.6
|
1.0
|
CG
|
C:ASP143
|
3.5
|
58.5
|
1.0
|
CD2
|
C:HIS78
|
3.6
|
72.5
|
1.0
|
CE1
|
C:HIS78
|
3.6
|
73.9
|
1.0
|
OD1
|
C:ASP79
|
3.7
|
80.0
|
1.0
|
CE1
|
C:HIS54
|
3.8
|
61.4
|
1.0
|
CG
|
C:ASP79
|
3.8
|
78.8
|
1.0
|
OH
|
C:TYR51
|
3.8
|
87.9
|
1.0
|
OD2
|
C:ASP143
|
3.9
|
61.9
|
1.0
|
O2'
|
C:G4P803
|
4.0
|
190.9
|
1.0
|
CG
|
C:HIS54
|
4.5
|
60.0
|
1.0
|
ND2
|
C:ASN147
|
4.6
|
63.8
|
1.0
|
O3C
|
C:G4P803
|
4.7
|
189.9
|
1.0
|
ND1
|
C:HIS54
|
4.7
|
61.2
|
1.0
|
OD1
|
C:ASN147
|
4.7
|
63.6
|
1.0
|
CB
|
C:ASP143
|
4.7
|
51.0
|
1.0
|
CG
|
C:HIS78
|
4.8
|
71.2
|
1.0
|
ND1
|
C:HIS78
|
4.8
|
73.4
|
1.0
|
O2D
|
C:G4P803
|
4.8
|
189.5
|
1.0
|
O
|
C:HOH981
|
4.8
|
70.6
|
1.0
|
CZ
|
C:TYR51
|
4.9
|
86.6
|
1.0
|
|
Manganese binding site 4 out
of 4 in 7qpr
Go back to
Manganese Binding Sites List in 7qpr
Manganese binding site 4 out
of 4 in the Structure of Full Length Spot
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Structure of Full Length Spot within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn801
b:134.7
occ:1.00
|
OD1
|
D:ASP143
|
2.5
|
55.0
|
1.0
|
NE2
|
D:HIS78
|
2.9
|
78.2
|
1.0
|
OD2
|
D:ASP79
|
2.9
|
87.8
|
1.0
|
OD1
|
D:ASP79
|
3.2
|
87.3
|
1.0
|
CG
|
D:ASP143
|
3.3
|
54.0
|
1.0
|
CG
|
D:ASP79
|
3.4
|
86.1
|
1.0
|
OD2
|
D:ASP143
|
3.6
|
56.7
|
1.0
|
NE2
|
D:HIS54
|
3.6
|
63.0
|
1.0
|
CD2
|
D:HIS78
|
3.6
|
77.2
|
1.0
|
O3C
|
D:G4P803
|
3.7
|
127.6
|
0.8
|
O2C
|
D:G4P803
|
3.8
|
127.6
|
0.8
|
CE1
|
D:HIS78
|
3.9
|
78.1
|
1.0
|
O3'
|
D:G4P803
|
4.0
|
127.6
|
0.8
|
O2'
|
D:G4P803
|
4.0
|
127.0
|
0.8
|
PC
|
D:G4P803
|
4.2
|
127.7
|
0.8
|
OH
|
D:TYR51
|
4.2
|
91.3
|
1.0
|
CD2
|
D:HIS54
|
4.3
|
62.3
|
1.0
|
ND2
|
D:ASN147
|
4.3
|
65.6
|
1.0
|
CE1
|
D:HIS54
|
4.6
|
63.2
|
1.0
|
CB
|
D:ASP143
|
4.7
|
48.9
|
1.0
|
CG
|
D:HIS78
|
4.8
|
75.9
|
1.0
|
O
|
D:HOH949
|
4.9
|
44.1
|
1.0
|
CB
|
D:ASP79
|
4.9
|
81.3
|
1.0
|
ND1
|
D:HIS78
|
5.0
|
77.6
|
1.0
|
|
Reference:
A.Garcia-Pino,
H.Tamman.
Structure of Full Length Spot To Be Published.
Page generated: Sun Oct 6 10:27:23 2024
|