Manganese in PDB 7qoe: Structure of A Small Alarmone Hydrolase From Leptospira Levettii

The structure of Structure of A Small Alarmone Hydrolase From Leptospira Levettii, PDB code: 7qoe was solved by F.Bisiak, D.E.Brodersen, A.Chrenkova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.14 / 1.20
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	98.708, 98.708, 40.086, 90, 90, 90
R / Rfree (%)	15.2 / 18.1

The binding sites of Manganese atom in the Structure of A Small Alarmone Hydrolase From Leptospira Levettii (pdb code 7qoe). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of A Small Alarmone Hydrolase From Leptospira Levettii, PDB code: 7qoe:

Manganese binding site 1 out of 1 in the Structure of A Small Alarmone Hydrolase From Leptospira Levettii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of A Small Alarmone Hydrolase From Leptospira Levettii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:17.1 occ:1.00 O A:HOH528 2.0 26.6 1.0 NE2 A:HIS66 2.1 22.7 1.0 O A:HOH412 2.1 24.3 0.8 NE2 A:HIS42 2.2 20.6 1.0 OD2 A:ASP133 2.2 21.2 1.0 OD1 A:ASP67 2.3 25.6 1.0 CG A:ASP133 3.0 20.1 1.0 CE1 A:HIS66 3.0 21.0 1.0 CE1 A:HIS42 3.0 19.1 1.0 HE1 A:HIS66 3.1 25.3 1.0 CD2 A:HIS66 3.1 20.5 1.0 HE1 A:HIS42 3.1 23.0 1.0 CG A:ASP67 3.2 23.5 1.0 CD2 A:HIS42 3.2 20.0 1.0 OD1 A:ASP133 3.3 22.5 1.0 HH A:TYR39 3.3 29.6 1.0 OD2 A:ASP67 3.3 24.6 1.0 HD2 A:HIS66 3.4 24.6 1.0 HD2 A:HIS42 3.5 24.0 1.0 HD21 A:ASN137 3.7 41.0 1.0 OH A:TYR39 3.8 24.6 1.0 O A:HOH505 4.1 30.5 0.9 ND1 A:HIS66 4.1 21.5 1.0 ND1 A:HIS42 4.2 20.5 1.0 O A:HOH580 4.2 47.1 1.0 CG A:HIS66 4.2 20.2 1.0 CB A:ASP133 4.2 18.1 1.0 O A:HOH584 4.3 34.0 0.7 CG A:HIS42 4.3 19.4 1.0 HG21 A:VAL46 4.3 21.4 1.0 HB2 A:ASP133 4.3 21.8 1.0 O A:HOH537 4.4 37.5 1.0 HA A:ASP133 4.5 21.2 1.0 ND2 A:ASN137 4.5 34.1 1.0 CB A:ASP67 4.5 21.1 1.0 HB2 A:ASP67 4.6 25.4 1.0 HD23 A:LEU43 4.6 22.5 1.0 OD1 A:ASN137 4.9 37.7 1.0 CA A:ASP133 4.9 17.6 1.0 HD1 A:HIS66 4.9 25.9 1.0 HE2 A:TYR39 4.9 26.5 1.0 CZ A:TYR39 4.9 21.9 1.0 HD1 A:HIS42 4.9 24.6 1.0 HB3 A:ASP133 5.0 21.8 1.0

F.Bisiak, A.Chrenkova, S.D.Zhang, J.N.Pedersen, D.E.Otzen, Y.E.Zhang, D.E.Brodersen. Structural Variations Between Small Alarmone Hydrolase Dimers Support Different Modes of Regulation of the Stringent Response. J.Biol.Chem. V. 298 02142 2022.
ISSN: ESSN 1083-351X
PubMed: 35714769
DOI: 10.1016/J.JBC.2022.102142