Atomistry » Manganese » PDB 7ohl-7sck » 7qjj
Atomistry »
  Manganese »
    PDB 7ohl-7sck »
      7qjj »

Manganese in PDB 7qjj: X-Ray Structure of A MN2+ Soak of Elenrmt in Complex with Two Nanobodies at 4.6A

Protein crystallography data

The structure of X-Ray Structure of A MN2+ Soak of Elenrmt in Complex with Two Nanobodies at 4.6A, PDB code: 7qjj was solved by K.Ramanadane, M.S.Straub, R.Dutzler, C.Manatschal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 4.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 92.9, 115.93, 148.66, 90, 107.59, 90
R / Rfree (%) 28.4 / 32.7

Manganese Binding Sites:

The binding sites of Manganese atom in the X-Ray Structure of A MN2+ Soak of Elenrmt in Complex with Two Nanobodies at 4.6A (pdb code 7qjj). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the X-Ray Structure of A MN2+ Soak of Elenrmt in Complex with Two Nanobodies at 4.6A, PDB code: 7qjj:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 7qjj

Go back to Manganese Binding Sites List in 7qjj
Manganese binding site 1 out of 2 in the X-Ray Structure of A MN2+ Soak of Elenrmt in Complex with Two Nanobodies at 4.6A


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Structure of A MN2+ Soak of Elenrmt in Complex with Two Nanobodies at 4.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn501

b:183.0
occ:1.00
O A:THR224 3.2 183.7 1.0
OD1 A:ASP55 3.2 241.9 1.0
O A:GLY53 3.7 315.7 1.0
CG A:ASP55 4.2 257.4 1.0
C A:THR224 4.3 196.4 1.0
OD1 A:ASN54 4.4 284.9 1.0
N A:ASP55 4.5 288.0 1.0
OG1 A:THR224 4.5 192.7 1.0
OD2 A:ASP55 4.5 246.0 1.0
CA A:ASN54 4.5 322.3 1.0
CA A:GLY58 4.6 252.1 1.0
C A:GLY53 4.6 361.4 1.0
CA A:THR225 4.7 226.2 1.0
CE A:MET230 4.8 234.2 1.0
N A:GLY58 5.0 245.3 1.0

Manganese binding site 2 out of 2 in 7qjj

Go back to Manganese Binding Sites List in 7qjj
Manganese binding site 2 out of 2 in the X-Ray Structure of A MN2+ Soak of Elenrmt in Complex with Two Nanobodies at 4.6A


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of X-Ray Structure of A MN2+ Soak of Elenrmt in Complex with Two Nanobodies at 4.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn501

b:200.9
occ:1.00
O E:THR224 3.2 178.6 1.0
OD1 E:ASP55 3.2 265.8 1.0
O E:GLY53 3.6 310.6 1.0
CG E:ASP55 4.2 267.1 1.0
C E:THR224 4.4 178.4 1.0
OD1 E:ASN54 4.4 279.4 1.0
N E:ASP55 4.5 314.9 1.0
CA E:ASN54 4.5 335.9 1.0
OD2 E:ASP55 4.5 251.1 1.0
C E:GLY53 4.6 364.8 1.0
OG1 E:THR224 4.6 196.1 1.0
CA E:GLY58 4.6 289.3 1.0
CA E:THR225 4.8 183.2 1.0
CE E:MET230 4.8 224.0 1.0
N E:ASN54 5.0 358.6 1.0
N E:GLY58 5.0 288.9 1.0

Reference:

K.Ramanadane, M.S.Straub, R.Dutzler, C.Manatschal. Structural and Functional Properties of A Magnesium Transporter of the SLC11/Nramp Family. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 35001872
DOI: 10.7554/ELIFE.74589
Page generated: Sun Oct 6 10:26:34 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy