Manganese in PDB 7pi0: Unstacked Compact Dunaliella Psii
Enzymatic activity of Unstacked Compact Dunaliella Psii
All present enzymatic activity of Unstacked Compact Dunaliella Psii:
1.10.3.9;
Other elements in 7pi0:
The structure of Unstacked Compact Dunaliella Psii also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the Unstacked Compact Dunaliella Psii
(pdb code 7pi0). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the
Unstacked Compact Dunaliella Psii, PDB code: 7pi0:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Manganese binding site 1 out
of 8 in 7pi0
Go back to
Manganese Binding Sites List in 7pi0
Manganese binding site 1 out
of 8 in the Unstacked Compact Dunaliella Psii
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Unstacked Compact Dunaliella Psii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:73.7
occ:1.00
|
MN1
|
A:OEX401
|
0.0
|
73.7
|
1.0
|
O3
|
A:OEX401
|
1.8
|
73.7
|
1.0
|
O1
|
A:OEX401
|
1.8
|
73.7
|
1.0
|
O5
|
A:OEX401
|
2.6
|
73.7
|
1.0
|
OE2
|
A:GLU189
|
2.6
|
37.9
|
1.0
|
OD2
|
A:ASP342
|
2.7
|
53.7
|
1.0
|
MN2
|
A:OEX401
|
2.7
|
73.7
|
1.0
|
NE2
|
A:HIS332
|
2.9
|
47.7
|
1.0
|
OD1
|
A:ASP342
|
3.0
|
53.7
|
1.0
|
CG
|
A:ASP342
|
3.2
|
53.7
|
1.0
|
MN3
|
A:OEX401
|
3.3
|
73.7
|
1.0
|
CD
|
A:GLU189
|
3.4
|
37.9
|
1.0
|
CA1
|
A:OEX401
|
3.5
|
73.7
|
1.0
|
CD2
|
A:HIS332
|
3.5
|
47.7
|
1.0
|
O2
|
A:OEX401
|
3.6
|
73.7
|
1.0
|
NE2
|
A:HIS337
|
3.6
|
52.5
|
1.0
|
OE1
|
A:GLU189
|
3.8
|
37.9
|
1.0
|
CE1
|
A:HIS332
|
4.0
|
47.7
|
1.0
|
CE1
|
A:HIS337
|
4.2
|
52.5
|
1.0
|
OE1
|
C:GLU342
|
4.3
|
49.5
|
1.0
|
CG
|
A:GLU189
|
4.4
|
37.9
|
1.0
|
O
|
A:ALA344
|
4.4
|
54.8
|
1.0
|
OE2
|
C:GLU342
|
4.5
|
49.5
|
1.0
|
CB
|
A:ASP342
|
4.7
|
53.7
|
1.0
|
OE2
|
A:GLU333
|
4.8
|
52.6
|
1.0
|
CG
|
A:HIS332
|
4.8
|
47.7
|
1.0
|
CD2
|
A:HIS337
|
4.8
|
52.5
|
1.0
|
CD
|
C:GLU342
|
4.8
|
49.5
|
1.0
|
MN4
|
A:OEX401
|
4.9
|
73.7
|
1.0
|
CD
|
A:GLU333
|
5.0
|
52.6
|
1.0
|
OE1
|
A:GLU333
|
5.0
|
52.6
|
1.0
|
|
Manganese binding site 2 out
of 8 in 7pi0
Go back to
Manganese Binding Sites List in 7pi0
Manganese binding site 2 out
of 8 in the Unstacked Compact Dunaliella Psii
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Unstacked Compact Dunaliella Psii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:73.7
occ:1.00
|
MN2
|
A:OEX401
|
0.0
|
73.7
|
1.0
|
O1
|
A:OEX401
|
2.0
|
73.7
|
1.0
|
O2
|
A:OEX401
|
2.1
|
73.7
|
1.0
|
O3
|
A:OEX401
|
2.1
|
73.7
|
1.0
|
OE1
|
C:GLU342
|
2.7
|
49.5
|
1.0
|
O
|
A:ALA344
|
2.7
|
54.8
|
1.0
|
MN1
|
A:OEX401
|
2.7
|
73.7
|
1.0
|
MN3
|
A:OEX401
|
2.9
|
73.7
|
1.0
|
OXT
|
A:ALA344
|
3.0
|
54.8
|
1.0
|
C
|
A:ALA344
|
3.0
|
54.8
|
1.0
|
OD1
|
A:ASP342
|
3.0
|
53.7
|
1.0
|
CA1
|
A:OEX401
|
3.3
|
73.7
|
1.0
|
CD
|
C:GLU342
|
3.4
|
49.5
|
1.0
|
OE2
|
C:GLU342
|
3.8
|
49.5
|
1.0
|
O5
|
A:OEX401
|
3.9
|
73.7
|
1.0
|
O
|
C:HOH1090
|
4.0
|
46.9
|
1.0
|
NH2
|
C:ARG345
|
4.0
|
39.3
|
1.0
|
CG
|
A:ASP342
|
4.0
|
53.7
|
1.0
|
NE2
|
A:HIS337
|
4.2
|
52.5
|
1.0
|
CA
|
A:ALA344
|
4.2
|
54.8
|
1.0
|
CB
|
A:ALA344
|
4.3
|
54.8
|
1.0
|
OD2
|
A:ASP342
|
4.4
|
53.7
|
1.0
|
CZ
|
C:ARG345
|
4.5
|
39.3
|
1.0
|
CG
|
C:GLU342
|
4.5
|
49.5
|
1.0
|
O4
|
A:OEX401
|
4.6
|
73.7
|
1.0
|
NH1
|
C:ARG345
|
4.6
|
39.3
|
1.0
|
N
|
A:ALA344
|
4.7
|
54.8
|
1.0
|
CB
|
C:GLU342
|
4.7
|
49.5
|
1.0
|
CD2
|
A:HIS337
|
4.9
|
52.5
|
1.0
|
OE2
|
A:GLU189
|
5.0
|
37.9
|
1.0
|
|
Manganese binding site 3 out
of 8 in 7pi0
Go back to
Manganese Binding Sites List in 7pi0
Manganese binding site 3 out
of 8 in the Unstacked Compact Dunaliella Psii
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Unstacked Compact Dunaliella Psii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:73.7
occ:1.00
|
MN3
|
A:OEX401
|
0.0
|
73.7
|
1.0
|
O2
|
A:OEX401
|
1.9
|
73.7
|
1.0
|
O3
|
A:OEX401
|
2.0
|
73.7
|
1.0
|
O4
|
A:OEX401
|
2.1
|
73.7
|
1.0
|
O5
|
A:OEX401
|
2.4
|
73.7
|
1.0
|
OE2
|
A:GLU333
|
2.7
|
52.6
|
1.0
|
MN2
|
A:OEX401
|
2.9
|
73.7
|
1.0
|
MN4
|
A:OEX401
|
2.9
|
73.7
|
1.0
|
MN1
|
A:OEX401
|
3.3
|
73.7
|
1.0
|
CA1
|
A:OEX401
|
3.4
|
73.7
|
1.0
|
NH2
|
C:ARG345
|
3.6
|
39.3
|
1.0
|
OE2
|
C:GLU342
|
3.6
|
49.5
|
1.0
|
CD
|
A:GLU333
|
3.6
|
52.6
|
1.0
|
O1
|
A:OEX401
|
3.6
|
73.7
|
1.0
|
O
|
C:HOH1152
|
3.6
|
46.5
|
1.0
|
O
|
A:HOH1110
|
3.7
|
42.9
|
1.0
|
OD1
|
A:ASP170
|
3.9
|
38.4
|
1.0
|
CD
|
C:GLU342
|
4.0
|
49.5
|
1.0
|
OE1
|
C:GLU342
|
4.2
|
49.5
|
1.0
|
CG
|
A:GLU333
|
4.2
|
52.6
|
1.0
|
OE1
|
A:GLU333
|
4.3
|
52.6
|
1.0
|
CZ
|
C:ARG345
|
4.7
|
39.3
|
1.0
|
O
|
A:HOH1071
|
4.8
|
41.8
|
1.0
|
NE2
|
A:HIS337
|
4.9
|
52.5
|
1.0
|
OE2
|
A:GLU189
|
4.9
|
37.9
|
1.0
|
CB
|
A:GLU333
|
4.9
|
52.6
|
1.0
|
CG
|
A:ASP170
|
5.0
|
38.4
|
1.0
|
CG
|
C:GLU342
|
5.0
|
49.5
|
1.0
|
OXT
|
A:ALA344
|
5.0
|
54.8
|
1.0
|
|
Manganese binding site 4 out
of 8 in 7pi0
Go back to
Manganese Binding Sites List in 7pi0
Manganese binding site 4 out
of 8 in the Unstacked Compact Dunaliella Psii
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Unstacked Compact Dunaliella Psii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:73.7
occ:1.00
|
MN4
|
A:OEX401
|
0.0
|
73.7
|
1.0
|
O4
|
A:OEX401
|
2.1
|
73.7
|
1.0
|
O5
|
A:OEX401
|
2.4
|
73.7
|
1.0
|
OE2
|
A:GLU333
|
2.7
|
52.6
|
1.0
|
OD1
|
A:ASP170
|
2.7
|
38.4
|
1.0
|
O
|
A:HOH1071
|
2.8
|
41.8
|
1.0
|
MN3
|
A:OEX401
|
2.9
|
73.7
|
1.0
|
O
|
A:HOH1077
|
3.7
|
42.2
|
1.0
|
O2
|
A:OEX401
|
3.8
|
73.7
|
1.0
|
CA1
|
A:OEX401
|
3.8
|
73.7
|
1.0
|
CD
|
A:GLU333
|
3.8
|
52.6
|
1.0
|
O
|
A:HOH1026
|
3.8
|
36.5
|
1.0
|
CG
|
A:ASP170
|
3.9
|
38.4
|
1.0
|
O
|
A:HOH1110
|
4.1
|
42.9
|
1.0
|
OE1
|
A:GLU333
|
4.2
|
52.6
|
1.0
|
O
|
A:SER169
|
4.4
|
34.8
|
1.0
|
CA
|
A:ASP170
|
4.5
|
38.4
|
1.0
|
O3
|
A:OEX401
|
4.5
|
73.7
|
1.0
|
CG1
|
A:VAL185
|
4.7
|
30.2
|
1.0
|
CB
|
A:ASP170
|
4.7
|
38.4
|
1.0
|
O
|
A:HOH1046
|
4.8
|
39.7
|
1.0
|
OD2
|
A:ASP170
|
4.8
|
38.4
|
1.0
|
MN1
|
A:OEX401
|
4.9
|
73.7
|
1.0
|
C
|
A:SER169
|
4.9
|
34.8
|
1.0
|
NH2
|
C:ARG345
|
4.9
|
39.3
|
1.0
|
N
|
A:ASP170
|
4.9
|
38.4
|
1.0
|
|
Manganese binding site 5 out
of 8 in 7pi0
Go back to
Manganese Binding Sites List in 7pi0
Manganese binding site 5 out
of 8 in the Unstacked Compact Dunaliella Psii
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Unstacked Compact Dunaliella Psii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn401
b:69.8
occ:1.00
|
MN1
|
a:OEX401
|
0.0
|
69.8
|
1.0
|
O3
|
a:OEX401
|
1.8
|
69.8
|
1.0
|
O1
|
a:OEX401
|
1.8
|
69.8
|
1.0
|
O5
|
a:OEX401
|
2.6
|
69.8
|
1.0
|
OE2
|
a:GLU189
|
2.6
|
32.9
|
1.0
|
OD2
|
a:ASP342
|
2.7
|
51.8
|
1.0
|
MN2
|
a:OEX401
|
2.7
|
69.8
|
1.0
|
NE2
|
a:HIS332
|
2.9
|
42.0
|
1.0
|
OD1
|
a:ASP342
|
3.1
|
51.8
|
1.0
|
CG
|
a:ASP342
|
3.2
|
51.8
|
1.0
|
MN3
|
a:OEX401
|
3.3
|
69.8
|
1.0
|
CD
|
a:GLU189
|
3.3
|
32.9
|
1.0
|
CA1
|
a:OEX401
|
3.5
|
69.8
|
1.0
|
NE2
|
a:HIS337
|
3.5
|
52.0
|
1.0
|
CD2
|
a:HIS332
|
3.6
|
42.0
|
1.0
|
O2
|
a:OEX401
|
3.6
|
69.8
|
1.0
|
OE1
|
a:GLU189
|
3.8
|
32.9
|
1.0
|
CE1
|
a:HIS332
|
4.0
|
42.0
|
1.0
|
CE1
|
a:HIS337
|
4.1
|
52.0
|
1.0
|
OE1
|
c:GLU342
|
4.3
|
50.1
|
1.0
|
CG
|
a:GLU189
|
4.3
|
32.9
|
1.0
|
OXT
|
a:ALA344
|
4.3
|
53.8
|
1.0
|
OE2
|
c:GLU342
|
4.4
|
50.1
|
1.0
|
CD2
|
a:HIS337
|
4.7
|
52.0
|
1.0
|
CB
|
a:ASP342
|
4.7
|
51.8
|
1.0
|
CD
|
c:GLU342
|
4.8
|
50.1
|
1.0
|
CG
|
a:HIS332
|
4.8
|
42.0
|
1.0
|
MN4
|
a:OEX401
|
4.9
|
69.8
|
1.0
|
ND1
|
a:HIS332
|
5.0
|
42.0
|
1.0
|
|
Manganese binding site 6 out
of 8 in 7pi0
Go back to
Manganese Binding Sites List in 7pi0
Manganese binding site 6 out
of 8 in the Unstacked Compact Dunaliella Psii
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Unstacked Compact Dunaliella Psii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn401
b:69.8
occ:1.00
|
MN2
|
a:OEX401
|
0.0
|
69.8
|
1.0
|
O1
|
a:OEX401
|
2.0
|
69.8
|
1.0
|
O2
|
a:OEX401
|
2.1
|
69.8
|
1.0
|
O3
|
a:OEX401
|
2.1
|
69.8
|
1.0
|
OE1
|
c:GLU342
|
2.6
|
50.1
|
1.0
|
MN1
|
a:OEX401
|
2.7
|
69.8
|
1.0
|
OXT
|
a:ALA344
|
2.8
|
53.8
|
1.0
|
O
|
a:ALA344
|
2.8
|
53.8
|
1.0
|
MN3
|
a:OEX401
|
2.9
|
69.8
|
1.0
|
C
|
a:ALA344
|
3.0
|
53.8
|
1.0
|
OD1
|
a:ASP342
|
3.2
|
51.8
|
1.0
|
CA1
|
a:OEX401
|
3.3
|
69.8
|
1.0
|
CD
|
c:GLU342
|
3.4
|
50.1
|
1.0
|
OE2
|
c:GLU342
|
3.7
|
50.1
|
1.0
|
O
|
a:HOH1091
|
3.8
|
48.0
|
1.0
|
NH2
|
c:ARG345
|
3.9
|
37.9
|
1.0
|
O5
|
a:OEX401
|
3.9
|
69.8
|
1.0
|
O
|
a:HOH1082
|
4.0
|
42.6
|
1.0
|
CG
|
a:ASP342
|
4.2
|
51.8
|
1.0
|
NE2
|
a:HIS337
|
4.2
|
52.0
|
1.0
|
CA
|
a:ALA344
|
4.3
|
53.8
|
1.0
|
CZ
|
c:ARG345
|
4.4
|
37.9
|
1.0
|
OD2
|
a:ASP342
|
4.5
|
51.8
|
1.0
|
CG
|
c:GLU342
|
4.5
|
50.1
|
1.0
|
CB
|
a:ALA344
|
4.6
|
53.8
|
1.0
|
O4
|
a:OEX401
|
4.6
|
69.8
|
1.0
|
CB
|
c:GLU342
|
4.6
|
50.1
|
1.0
|
NH1
|
c:ARG345
|
4.8
|
37.9
|
1.0
|
CD2
|
a:HIS337
|
4.9
|
52.0
|
1.0
|
N
|
a:ALA344
|
4.9
|
53.8
|
1.0
|
|
Manganese binding site 7 out
of 8 in 7pi0
Go back to
Manganese Binding Sites List in 7pi0
Manganese binding site 7 out
of 8 in the Unstacked Compact Dunaliella Psii
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Unstacked Compact Dunaliella Psii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn401
b:69.8
occ:1.00
|
MN3
|
a:OEX401
|
0.0
|
69.8
|
1.0
|
O2
|
a:OEX401
|
1.9
|
69.8
|
1.0
|
O3
|
a:OEX401
|
2.0
|
69.8
|
1.0
|
O4
|
a:OEX401
|
2.1
|
69.8
|
1.0
|
O5
|
a:OEX401
|
2.4
|
69.8
|
1.0
|
OE2
|
a:GLU333
|
2.9
|
49.0
|
1.0
|
MN2
|
a:OEX401
|
2.9
|
69.8
|
1.0
|
MN4
|
a:OEX401
|
2.9
|
69.8
|
1.0
|
MN1
|
a:OEX401
|
3.3
|
69.8
|
1.0
|
CA1
|
a:OEX401
|
3.4
|
69.8
|
1.0
|
O
|
a:HOH1099
|
3.5
|
43.9
|
1.0
|
CD
|
a:GLU333
|
3.5
|
49.0
|
1.0
|
O1
|
a:OEX401
|
3.6
|
69.8
|
1.0
|
OE2
|
c:GLU342
|
3.7
|
50.1
|
1.0
|
NH2
|
c:ARG345
|
3.7
|
37.9
|
1.0
|
OD1
|
a:ASP170
|
3.9
|
30.5
|
1.0
|
CG
|
a:GLU333
|
4.0
|
49.0
|
1.0
|
CD
|
c:GLU342
|
4.2
|
50.1
|
1.0
|
OE1
|
c:GLU342
|
4.3
|
50.1
|
1.0
|
OE1
|
a:GLU333
|
4.3
|
49.0
|
1.0
|
O
|
a:HOH1064
|
4.7
|
41.5
|
1.0
|
CB
|
a:GLU333
|
4.8
|
49.0
|
1.0
|
CG
|
a:ASP170
|
4.8
|
30.5
|
1.0
|
CD2
|
a:HIS332
|
4.9
|
42.0
|
1.0
|
OD2
|
a:ASP170
|
4.9
|
30.5
|
1.0
|
CZ
|
c:ARG345
|
4.9
|
37.9
|
1.0
|
NE2
|
a:HIS337
|
4.9
|
52.0
|
1.0
|
|
Manganese binding site 8 out
of 8 in 7pi0
Go back to
Manganese Binding Sites List in 7pi0
Manganese binding site 8 out
of 8 in the Unstacked Compact Dunaliella Psii
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Unstacked Compact Dunaliella Psii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn401
b:69.8
occ:1.00
|
MN4
|
a:OEX401
|
0.0
|
69.8
|
1.0
|
O4
|
a:OEX401
|
2.1
|
69.8
|
1.0
|
O5
|
a:OEX401
|
2.4
|
69.8
|
1.0
|
OD1
|
a:ASP170
|
2.7
|
30.5
|
1.0
|
OE2
|
a:GLU333
|
2.7
|
49.0
|
1.0
|
O
|
a:HOH1064
|
2.7
|
41.5
|
1.0
|
MN3
|
a:OEX401
|
2.9
|
69.8
|
1.0
|
O
|
a:HOH1077
|
3.1
|
44.0
|
1.0
|
O
|
a:HOH1055
|
3.5
|
40.6
|
1.0
|
O
|
a:HOH1032
|
3.5
|
34.5
|
1.0
|
O2
|
a:OEX401
|
3.7
|
69.8
|
1.0
|
CA1
|
a:OEX401
|
3.8
|
69.8
|
1.0
|
CD
|
a:GLU333
|
3.8
|
49.0
|
1.0
|
CG
|
a:ASP170
|
3.9
|
30.5
|
1.0
|
OE1
|
a:GLU333
|
4.2
|
49.0
|
1.0
|
CG1
|
a:VAL185
|
4.3
|
29.2
|
1.0
|
O
|
a:HOH1041
|
4.4
|
36.6
|
1.0
|
O
|
a:SER169
|
4.5
|
27.5
|
1.0
|
O3
|
a:OEX401
|
4.5
|
69.8
|
1.0
|
O
|
a:HOH1099
|
4.5
|
43.9
|
1.0
|
CA
|
a:ASP170
|
4.6
|
30.5
|
1.0
|
OD2
|
a:ASP170
|
4.7
|
30.5
|
1.0
|
O
|
a:HOH1014
|
4.7
|
31.7
|
1.0
|
CB
|
a:ASP170
|
4.8
|
30.5
|
1.0
|
MN1
|
a:OEX401
|
4.9
|
69.8
|
1.0
|
CG
|
a:GLU333
|
5.0
|
49.0
|
1.0
|
|
Reference:
I.Caspy,
M.Fadeeva,
Y.Mazor,
M.Nelson.
Structure of Dunaliella Photosystem II Reveals Conformational Flexibility of Stacked and Unstacked Supercomplexes To Be Published.
Page generated: Sun Oct 6 10:24:24 2024
|