Manganese in PDB 7om7: Thosea Asigna Virus Rdrp Domain in Complex with Rna and Nucleotide Umpnpp

The structure of Thosea Asigna Virus Rdrp Domain in Complex with Rna and Nucleotide Umpnpp, PDB code: 7om7 was solved by D.S.Ferrero, M.Falqui, N.Verdaguer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	59.09 / 2.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	67.48, 206.266, 115.59, 90, 90.75, 90
R / Rfree (%)	21.5 / 21.6

The binding sites of Manganese atom in the Thosea Asigna Virus Rdrp Domain in Complex with Rna and Nucleotide Umpnpp (pdb code 7om7). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Thosea Asigna Virus Rdrp Domain in Complex with Rna and Nucleotide Umpnpp, PDB code: 7om7:

Manganese binding site 1 out of 1 in the Thosea Asigna Virus Rdrp Domain in Complex with Rna and Nucleotide Umpnpp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Thosea Asigna Virus Rdrp Domain in Complex with Rna and Nucleotide Umpnpp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn702 b:111.1 occ:1.00 OD2 A:ASP351 2.5 69.0 1.0 CG A:ASP351 3.2 65.6 1.0 OD1 A:ASP351 3.3 64.1 1.0 O5' A:2KH701 3.4 197.0 1.0 O4' A:2KH701 3.4 164.7 1.0 C5' A:2KH701 3.4 179.8 1.0 O3' E:U8 3.5 76.3 1.0 C3' E:U8 3.6 71.5 1.0 O2B A:2KH701 3.7 135.9 1.0 C4' A:2KH701 3.8 165.1 1.0 C6 A:2KH701 4.0 95.1 1.0 C2' E:U8 4.3 73.7 1.0 O1B A:2KH701 4.4 83.5 1.0 O5' E:U8 4.6 63.5 1.0 C1' A:2KH701 4.6 140.0 1.0 CB A:ASP351 4.6 58.8 1.0 PB A:2KH701 4.6 96.6 1.0 N1 A:2KH701 4.8 103.2 1.0 C4' E:U8 4.8 69.4 1.0 PA A:2KH701 4.9 190.3 1.0 C5' E:U8 5.0 67.6 1.0 C5 A:2KH701 5.0 74.1 1.0

D.S.Ferrero, M.Falqui, N.Verdaguer. Snapshots of A Non-Canonical Rdrp in Action. Viruses V. 13 2021.
ISSN: ESSN 1999-4915
PubMed: 34203380
DOI: 10.3390/V13071260