Manganese in PDB 7oj5: Cryo-Em Structure of Medicago Truncatula HISN5 Protein

Enzymatic activity of Cryo-Em Structure of Medicago Truncatula HISN5 Protein

All present enzymatic activity of Cryo-Em Structure of Medicago Truncatula HISN5 Protein:
4.2.1.19;

Manganese Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Manganese atom in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein (pdb code 7oj5). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 48 binding sites of Manganese where determined in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein, PDB code: 7oj5:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 48 in 7oj5

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Manganese binding site 1 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:15.7
occ:1.00
 OE1 A:GLU145 2.3 13.7 1.0
NE2 A:HIS213 2.3 10.4 1.0
NE2 A:HIS141 2.3 12.3 1.0
NE2 J:HIS238 2.3 9.2 1.0
O J:HOH409 2.5 11.1 1.0
CE1 J:HIS238 3.1 9.2 1.0
CE1 A:HIS141 3.1 12.3 1.0
CE1 A:HIS213 3.1 10.4 1.0
CD A:GLU145 3.2 13.7 1.0
CD2 A:HIS213 3.3 10.4 1.0
CD2 A:HIS141 3.4 12.3 1.0
CD2 J:HIS238 3.4 9.2 1.0
O J:HOH432 3.5 15.3 1.0
OE2 A:GLU145 3.6 13.7 1.0
O S:HOH434 4.2 15.6 1.0
ND1 A:HIS213 4.2 10.4 1.0
ND1 A:HIS141 4.3 12.3 1.0
ND1 J:HIS238 4.3 9.2 1.0
CG A:HIS213 4.4 10.4 1.0
CG A:GLU145 4.4 13.7 1.0
CG A:HIS141 4.5 12.3 1.0
CG J:HIS238 4.5 9.2 1.0
O A:HOH424 4.5 11.3 1.0
OD2 J:ASP176 4.7 11.8 1.0
CB A:GLU145 4.7 13.7 1.0

Manganese binding site 2 out of 48 in 7oj5

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Manganese binding site 2 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn302

b:19.0
occ:1.00
 OE1 A:GLU241 2.2 10.8 1.0
NE2 A:HIS237 2.4 10.5 1.0
NE2 A:HIS115 2.4 15.2 1.0
NE2 W:HIS142 2.5 14.8 1.0
OE2 A:GLU241 2.5 10.8 1.0
CD A:GLU241 2.7 10.8 1.0
CE1 W:HIS142 3.1 14.8 1.0
CE1 A:HIS237 3.2 10.5 1.0
CE1 A:HIS115 3.3 15.2 1.0
CD2 A:HIS237 3.4 10.5 1.0
CD2 A:HIS115 3.5 15.2 1.0
O A:HOH433 3.5 15.2 1.0
CD2 W:HIS142 3.7 14.8 1.0
CG A:GLU241 4.2 10.8 1.0
NE2 A:GLN119 4.3 18.3 1.0
ND1 W:HIS142 4.3 14.8 1.0
ND1 A:HIS237 4.4 10.5 1.0
ND1 A:HIS115 4.5 15.2 1.0
CG A:HIS237 4.5 10.5 1.0
CG A:HIS115 4.6 15.2 1.0
CG W:HIS142 4.7 14.8 1.0
CB A:GLU241 4.8 10.8 1.0
OE2 W:GLU89 4.9 29.1 1.0

Manganese binding site 3 out of 48 in 7oj5

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Manganese binding site 3 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn301

b:15.4
occ:1.00
 OE1 B:GLU145 2.3 13.7 1.0
NE2 B:HIS213 2.3 10.2 1.0
NE2 B:HIS141 2.3 12.5 1.0
NE2 I:HIS238 2.3 9.3 1.0
O I:HOH410 2.4 11.2 1.0
CE1 I:HIS238 3.1 9.3 1.0
CE1 B:HIS141 3.1 12.5 1.0
CE1 B:HIS213 3.1 10.2 1.0
CD B:GLU145 3.2 13.7 1.0
CD2 B:HIS213 3.3 10.2 1.0
CD2 B:HIS141 3.4 12.5 1.0
CD2 I:HIS238 3.4 9.3 1.0
O I:HOH434 3.5 15.5 1.0
OE2 B:GLU145 3.6 13.7 1.0
O R:HOH438 4.2 14.9 1.0
ND1 B:HIS213 4.2 10.2 1.0
ND1 B:HIS141 4.3 12.5 1.0
ND1 I:HIS238 4.3 9.3 1.0
CG B:HIS213 4.4 10.2 1.0
CG B:GLU145 4.4 13.7 1.0
CG B:HIS141 4.5 12.5 1.0
CG I:HIS238 4.5 9.3 1.0
O B:HOH423 4.5 11.3 1.0
OD2 I:ASP176 4.7 11.7 1.0
CB B:GLU145 4.7 13.7 1.0

Manganese binding site 4 out of 48 in 7oj5

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Manganese binding site 4 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn302

b:18.8
occ:1.00
 OE1 B:GLU241 2.2 10.8 1.0
NE2 B:HIS237 2.4 10.5 1.0
NE2 B:HIS115 2.4 15.3 1.0
NE2 N:HIS142 2.5 14.6 1.0
OE2 B:GLU241 2.5 10.8 1.0
CD B:GLU241 2.7 10.8 1.0
CE1 N:HIS142 3.1 14.6 1.0
CE1 B:HIS237 3.2 10.5 1.0
CE1 B:HIS115 3.3 15.3 1.0
CD2 B:HIS237 3.4 10.5 1.0
CD2 B:HIS115 3.5 15.3 1.0
O B:HOH433 3.6 14.9 1.0
CD2 N:HIS142 3.7 14.6 1.0
CG B:GLU241 4.2 10.8 1.0
NE2 B:GLN119 4.3 18.5 1.0
ND1 N:HIS142 4.3 14.6 1.0
ND1 B:HIS237 4.4 10.5 1.0
ND1 B:HIS115 4.5 15.3 1.0
CG B:HIS237 4.5 10.5 1.0
CG B:HIS115 4.6 15.3 1.0
CG N:HIS142 4.7 14.6 1.0
CB B:GLU241 4.8 10.8 1.0
OE2 N:GLU89 4.9 28.9 1.0

Manganese binding site 5 out of 48 in 7oj5

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Manganese binding site 5 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn301

b:15.4
occ:1.00
 OE1 C:GLU145 2.3 13.7 1.0
NE2 C:HIS213 2.3 10.1 1.0
NE2 C:HIS141 2.3 12.4 1.0
NE2 F:HIS238 2.3 9.2 1.0
O F:HOH409 2.4 11.2 1.0
CE1 F:HIS238 3.1 9.2 1.0
CE1 C:HIS141 3.1 12.4 1.0
CE1 C:HIS213 3.1 10.1 1.0
CD C:GLU145 3.2 13.7 1.0
CD2 C:HIS213 3.3 10.1 1.0
CD2 C:HIS141 3.4 12.4 1.0
CD2 F:HIS238 3.4 9.2 1.0
O F:HOH433 3.5 15.3 1.0
OE2 C:GLU145 3.6 13.7 1.0
O V:HOH435 4.2 15.3 1.0
ND1 C:HIS213 4.2 10.1 1.0
ND1 C:HIS141 4.3 12.4 1.0
ND1 F:HIS238 4.3 9.2 1.0
CG C:HIS213 4.4 10.1 1.0
CG C:GLU145 4.4 13.7 1.0
CG C:HIS141 4.5 12.4 1.0
CG F:HIS238 4.5 9.2 1.0
O C:HOH421 4.5 11.3 1.0
OD2 F:ASP176 4.7 11.6 1.0
CB C:GLU145 4.7 13.7 1.0

Manganese binding site 6 out of 48 in 7oj5

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Manganese binding site 6 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn302

b:19.6
occ:1.00
 OE1 C:GLU241 2.2 11.0 1.0
NE2 C:HIS237 2.4 10.6 1.0
NE2 C:HIS115 2.4 15.2 1.0
NE2 Q:HIS142 2.5 14.8 1.0
OE2 C:GLU241 2.5 11.0 1.0
CD C:GLU241 2.7 11.0 1.0
CE1 Q:HIS142 3.1 14.8 1.0
CE1 C:HIS237 3.2 10.6 1.0
CE1 C:HIS115 3.3 15.2 1.0
CD2 C:HIS237 3.4 10.6 1.0
CD2 C:HIS115 3.5 15.2 1.0
O C:HOH433 3.6 15.3 1.0
CD2 Q:HIS142 3.7 14.8 1.0
CG C:GLU241 4.2 11.0 1.0
NE2 C:GLN119 4.3 18.4 1.0
ND1 Q:HIS142 4.3 14.8 1.0
ND1 C:HIS237 4.4 10.6 1.0
ND1 C:HIS115 4.5 15.2 1.0
CG C:HIS237 4.5 10.6 1.0
CG C:HIS115 4.6 15.2 1.0
CG Q:HIS142 4.7 14.8 1.0
CB C:GLU241 4.8 11.0 1.0
OE2 Q:GLU89 4.9 28.9 1.0

Manganese binding site 7 out of 48 in 7oj5

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Manganese binding site 7 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn301

b:15.3
occ:1.00
 OE1 D:GLU145 2.3 13.7 1.0
NE2 D:HIS213 2.3 10.0 1.0
NE2 D:HIS141 2.3 12.3 1.0
NE2 S:HIS238 2.3 9.2 1.0
O S:HOH409 2.4 11.1 1.0
CE1 S:HIS238 3.1 9.2 1.0
CE1 D:HIS141 3.1 12.3 1.0
CE1 D:HIS213 3.1 10.0 1.0
CD D:GLU145 3.2 13.7 1.0
CD2 D:HIS213 3.3 10.0 1.0
CD2 D:HIS141 3.4 12.3 1.0
CD2 S:HIS238 3.4 9.2 1.0
O S:HOH433 3.5 15.1 1.0
OE2 D:GLU145 3.6 13.7 1.0
O X:HOH434 4.2 15.2 1.0
ND1 D:HIS213 4.2 10.0 1.0
ND1 D:HIS141 4.3 12.3 1.0
ND1 S:HIS238 4.3 9.2 1.0
CG D:HIS213 4.4 10.0 1.0
CG D:GLU145 4.4 13.7 1.0
CG D:HIS141 4.5 12.3 1.0
CG S:HIS238 4.5 9.2 1.0
O D:HOH424 4.5 11.2 1.0
OD2 S:ASP176 4.7 11.5 1.0
CB D:GLU145 4.7 13.7 1.0

Manganese binding site 8 out of 48 in 7oj5

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Manganese binding site 8 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn302

b:19.5
occ:1.00
 OE1 D:GLU241 2.2 11.0 1.0
NE2 D:HIS237 2.4 10.6 1.0
NE2 D:HIS115 2.4 15.5 1.0
NE2 H:HIS142 2.5 15.0 1.0
OE2 D:GLU241 2.5 11.0 1.0
CD D:GLU241 2.7 11.0 1.0
CE1 H:HIS142 3.1 15.0 1.0
CE1 D:HIS237 3.2 10.6 1.0
CE1 D:HIS115 3.3 15.5 1.0
CD2 D:HIS237 3.4 10.6 1.0
CD2 D:HIS115 3.5 15.5 1.0
O D:HOH434 3.6 15.6 1.0
CD2 H:HIS142 3.7 15.0 1.0
CG D:GLU241 4.2 11.0 1.0
NE2 D:GLN119 4.3 18.7 1.0
ND1 H:HIS142 4.3 15.0 1.0
ND1 D:HIS237 4.4 10.6 1.0
ND1 D:HIS115 4.5 15.5 1.0
CG D:HIS237 4.5 10.6 1.0
CG D:HIS115 4.6 15.5 1.0
CG H:HIS142 4.7 15.0 1.0
CB D:GLU241 4.8 11.0 1.0
OE2 H:GLU89 4.9 29.1 1.0

Manganese binding site 9 out of 48 in 7oj5

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Manganese binding site 9 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn301

b:15.4
occ:1.00
 OE1 E:GLU145 2.3 13.7 1.0
NE2 E:HIS213 2.3 10.1 1.0
NE2 E:HIS141 2.3 12.4 1.0
NE2 L:HIS238 2.3 9.2 1.0
O L:HOH409 2.4 11.1 1.0
CE1 L:HIS238 3.1 9.2 1.0
CE1 E:HIS141 3.1 12.4 1.0
CE1 E:HIS213 3.1 10.1 1.0
CD E:GLU145 3.2 13.7 1.0
CD2 E:HIS213 3.3 10.1 1.0
CD2 E:HIS141 3.4 12.4 1.0
CD2 L:HIS238 3.4 9.2 1.0
O L:HOH433 3.5 15.2 1.0
OE2 E:GLU145 3.6 13.7 1.0
O O:HOH433 4.2 15.1 1.0
ND1 E:HIS213 4.2 10.1 1.0
ND1 E:HIS141 4.3 12.4 1.0
ND1 L:HIS238 4.3 9.2 1.0
CG E:HIS213 4.4 10.1 1.0
CG E:GLU145 4.4 13.7 1.0
CG E:HIS141 4.5 12.4 1.0
CG L:HIS238 4.5 9.2 1.0
O E:HOH423 4.5 11.3 1.0
OD2 L:ASP176 4.7 11.5 1.0
CB E:GLU145 4.7 13.7 1.0

Manganese binding site 10 out of 48 in 7oj5

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Manganese binding site 10 out of 48 in the Cryo-Em Structure of Medicago Truncatula HISN5 Protein


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of Cryo-Em Structure of Medicago Truncatula HISN5 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn302

b:19.4
occ:1.00
 OE1 E:GLU241 2.2 10.9 1.0
NE2 E:HIS237 2.4 10.6 1.0
NE2 E:HIS115 2.4 15.2 1.0
NE2 Y:HIS142 2.5 15.1 1.0
OE2 E:GLU241 2.5 10.9 1.0
CD E:GLU241 2.7 10.9 1.0
CE1 Y:HIS142 3.1 15.1 1.0
CE1 E:HIS237 3.2 10.6 1.0
CE1 E:HIS115 3.3 15.2 1.0
CD2 E:HIS237 3.4 10.6 1.0
CD2 E:HIS115 3.5 15.2 1.0
O E:HOH436 3.6 15.4 1.0
CD2 Y:HIS142 3.7 15.1 1.0
CG E:GLU241 4.2 10.9 1.0
NE2 E:GLN119 4.3 18.4 1.0
ND1 Y:HIS142 4.3 15.1 1.0
ND1 E:HIS237 4.4 10.6 1.0
ND1 E:HIS115 4.5 15.2 1.0
CG E:HIS237 4.5 10.6 1.0
CG E:HIS115 4.6 15.2 1.0
CG Y:HIS142 4.7 15.1 1.0
CB E:GLU241 4.8 10.9 1.0
OE2 Y:GLU89 4.9 29.5 1.0

Reference:

W.Witek, M.Ruszkowski. Cryo-Em and Crystal Structures of A Herbicide Development Target, HISN5 To Be Published.
Page generated: Mon Jul 12 15:29:33 2021

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