Manganese in PDB 7nf4: Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn

All present enzymatic activity of Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn:
4.1.1.102;

The structure of Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn, PDB code: 7nf4 was solved by A.Saaret, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	85.07 / 1.69
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.45, 97.01, 177.03, 90, 90, 90
R / Rfree (%)	19.1 / 22

The structure of Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn also contains other interesting chemical elements:

Potassium

(K)

5 atoms

The binding sites of Manganese atom in the Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn (pdb code 7nf4). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn, PDB code: 7nf4:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn601 b:16.5 occ:1.00 OD1 A:ASN168 2.1 15.5 1.0 OE2 A:GLU233 2.1 13.0 1.0 O10 A:BYN603 2.2 14.2 1.0 O A:HOH725 2.2 12.9 1.0 O A:HOH749 2.2 13.2 1.0 ND1 A:HIS191 2.3 15.0 1.0 CG A:ASN168 3.1 13.5 1.0 CD A:GLU233 3.2 15.4 1.0 CE1 A:HIS191 3.2 16.1 1.0 CG A:HIS191 3.4 14.5 1.0 P1 A:BYN603 3.4 14.5 1.0 ND2 A:ASN168 3.4 13.0 1.0 OE1 A:GLU233 3.5 15.3 1.0 O8 A:BYN603 3.7 13.8 1.0 K A:K602 3.7 15.1 1.0 CB A:HIS191 3.7 14.8 1.0 O9 A:BYN603 4.3 16.1 1.0 CG1 A:ILE227 4.3 19.4 1.0 NE2 A:HIS191 4.4 16.0 1.0 CZ2 A:TRP166 4.4 15.3 1.0 O A:ILE227 4.4 16.8 1.0 CB A:ASN168 4.4 13.8 1.0 CD2 A:HIS191 4.4 14.3 1.0 O A:VAL231 4.5 16.6 1.0 O7 A:BYN603 4.5 14.6 1.0 CG A:GLU233 4.5 15.6 1.0 O A:TRP169 4.6 13.4 1.0 NE1 A:TRP166 4.7 16.2 1.0 O A:PRO228 4.7 16.3 1.0 CE2 A:TRP166 4.9 15.0 1.0 CA A:ASN168 5.0 13.7 1.0 CD1 A:ILE227 5.0 22.1 1.0

Manganese binding site 2 out of 2 in the Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of A. Niger Fdc T395M R435P P438W Variant (Anfdcii) in Complex with Prfmn within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn601 b:19.0 occ:1.00 OE2 B:GLU233 2.1 17.8 1.0 O10 B:BYN604 2.1 17.0 1.0 OD1 B:ASN168 2.2 18.0 1.0 O B:HOH793 2.2 20.6 1.0 ND1 B:HIS191 2.2 16.6 1.0 O B:HOH753 2.3 16.4 1.0 CE1 B:HIS191 3.1 17.4 1.0 CG B:ASN168 3.1 17.3 1.0 CD B:GLU233 3.2 21.2 1.0 P1 B:BYN604 3.3 18.0 1.0 CG B:HIS191 3.4 16.6 1.0 ND2 B:ASN168 3.4 18.9 1.0 OE1 B:GLU233 3.5 17.4 1.0 O8 B:BYN604 3.7 17.0 1.0 K B:K602 3.7 17.8 1.0 CB B:HIS191 3.8 17.9 1.0 CG1 B:ILE227 4.3 21.0 1.0 O9 B:BYN604 4.3 16.8 1.0 NE2 B:HIS191 4.3 17.5 1.0 O B:ILE227 4.3 17.9 1.0 CZ2 B:TRP166 4.4 21.3 1.0 CD2 B:HIS191 4.4 18.0 1.0 CB B:ASN168 4.5 17.3 1.0 O7 B:BYN604 4.5 18.2 1.0 CG B:GLU233 4.5 20.8 1.0 O B:TRP169 4.6 19.3 1.0 O B:VAL231 4.6 20.3 1.0 NE1 B:TRP166 4.7 18.7 1.0 O B:PRO228 4.8 20.8 1.0 CE2 B:TRP166 4.9 19.8 1.0 CD1 B:ILE227 5.0 22.4 1.0 CA B:ASN168 5.0 17.9 1.0

A.Saaret, B.Villiers, F.Stricher, M.Anissimova, M.Cadillon, R.Spiess, S.Hay, D.Leys. Directed Evolution of Prenylated Fmn-Dependent Fdc Supports Efficient in Vivo Isobutene Production Nat Commun 2021.
ISSN: ESSN 2041-1723