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Manganese in PDB 7n8w: Crystal Structure of ERI2 Nuclease Bound to Ramp

Protein crystallography data

The structure of Crystal Structure of ERI2 Nuclease Bound to Ramp, PDB code: 7n8w was solved by R.Thapar, A.S.Arvai, J.A.Tainer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.69 / 2.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.832, 56.338, 75.852, 90, 104.57, 90
R / Rfree (%) 17.9 / 22.3

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of ERI2 Nuclease Bound to Ramp (pdb code 7n8w). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of ERI2 Nuclease Bound to Ramp, PDB code: 7n8w:

Manganese binding site 1 out of 1 in 7n8w

Go back to Manganese Binding Sites List in 7n8w
Manganese binding site 1 out of 1 in the Crystal Structure of ERI2 Nuclease Bound to Ramp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of ERI2 Nuclease Bound to Ramp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn301

b:90.6
occ:1.00
O A:HOH402 2.3 69.9 1.0
O A:HOH403 2.3 66.7 1.0
O1P A:AMP301 2.8 117.3 1.0
NE2 B:HIS54 3.1 82.5 1.0
O3P A:AMP301 3.1 113.5 1.0
OD2 A:ASP41 3.2 73.5 1.0
CE1 B:HIS54 3.4 82.3 1.0
P A:AMP301 3.5 116.0 1.0
CG A:ASP41 3.7 73.4 1.0
O A:HOH401 3.8 52.5 1.0
OD1 A:ASP41 3.8 75.2 1.0
OD1 A:ASP156 4.2 65.6 1.0
CD2 B:HIS54 4.3 82.0 1.0
OD2 A:ASP156 4.3 67.4 1.0
O A:TRP152 4.3 61.0 1.0
O5' A:AMP301 4.6 108.0 1.0
CB A:TRP152 4.6 58.0 1.0
ND1 B:HIS54 4.6 82.3 1.0
O2P A:AMP301 4.6 120.2 1.0
C5' A:AMP301 4.6 102.6 1.0
CG A:ASP156 4.7 66.4 1.0
CD1 A:TRP152 4.8 60.6 1.0
CB A:ASP41 4.8 69.8 1.0

Reference:

R.Thapar, A.S.Arvai, J.A.Tainer. Crystal Structure of ERI2 Nuclease Bound to Ramp To Be Published.
Page generated: Sun Oct 6 10:16:41 2024

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