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Manganese in PDB 7n8o: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;

Other elements in 7n8o:

The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:

Calcium (Ca) 8 atoms
Iron (Fe) 6 atoms
Magnesium (Mg) 70 atoms
Chlorine (Cl) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 (pdb code 7n8o). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, PDB code: 7n8o:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 7n8o

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Manganese binding site 1 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:5.5
occ:1.00
 MN1 A:OEX401 0.0 5.5 1.0
O1 A:OEX401 2.1 5.5 1.0
OD2 A:ASP342 2.2 2.7 1.0
NE2 A:HIS332 2.3 2.6 1.0
OE2 A:GLU189 2.3 1.9 1.0
O3 A:OEX401 2.5 5.5 1.0
O5 A:OEX401 2.6 5.5 1.0
CD A:GLU189 3.0 1.9 1.0
OE1 A:GLU189 3.1 1.9 1.0
MN2 A:OEX401 3.1 5.5 1.0
CD2 A:HIS332 3.1 2.6 1.0
CG A:ASP342 3.2 2.7 1.0
CE1 A:HIS332 3.3 2.6 1.0
MN3 A:OEX401 3.4 5.5 1.0
OD1 A:ASP342 3.5 2.7 1.0
CA1 A:OEX401 3.8 5.5 1.0
O2 A:OEX401 3.9 5.5 1.0
NE2 A:HIS337 4.0 2.0 1.0
O A:HOH556 4.0 5.2 1.0
OE1 A:GLU329 4.2 4.1 1.0
OE1 A:GLU333 4.2 0.5 1.0
CG A:GLU189 4.3 1.9 1.0
CG A:HIS332 4.3 2.6 1.0
ND1 A:HIS332 4.4 2.6 1.0
CE1 A:HIS337 4.5 2.0 1.0
O A:HOH515 4.5 4.9 1.0
CB A:ASP342 4.6 2.7 1.0
CG1 A:VAL185 4.6 1.1 1.0
OE2 A:GLU329 4.7 4.1 1.0
CD A:GLU333 4.7 0.5 1.0
OE2 A:GLU333 4.7 0.5 1.0
OE1 C:GLU341 4.7 1.2 1.0
O A:ALA344 4.8 4.4 1.0
CD A:GLU329 4.8 4.1 1.0

Manganese binding site 2 out of 8 in 7n8o

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Manganese binding site 2 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:5.5
occ:1.00
 MN2 A:OEX401 0.0 5.5 1.0
O A:ALA344 1.9 4.4 1.0
O3 A:OEX401 2.1 5.5 1.0
OD1 A:ASP342 2.2 2.7 1.0
O2 A:OEX401 2.2 5.5 1.0
OE1 C:GLU341 2.3 1.2 1.0
O1 A:OEX401 2.7 5.5 1.0
MN3 A:OEX401 3.1 5.5 1.0
C A:ALA344 3.1 4.4 1.0
CG A:ASP342 3.1 2.7 1.0
MN1 A:OEX401 3.1 5.5 1.0
CD C:GLU341 3.2 1.2 1.0
OD2 A:ASP342 3.3 2.7 1.0
O C:HOH657 3.4 5.0 1.0
OE2 C:GLU341 3.5 1.2 1.0
CA1 A:OEX401 3.6 5.5 1.0
NE2 A:HIS337 3.9 2.0 1.0
O5 A:OEX401 4.0 5.5 1.0
O A:HOH556 4.1 5.2 1.0
CA A:ALA344 4.2 4.4 1.0
N A:ALA344 4.3 4.4 1.0
CD2 A:HIS337 4.4 2.0 1.0
CB A:ASP342 4.4 2.7 1.0
CG C:GLU341 4.6 1.2 1.0
CB A:ALA344 4.6 4.4 1.0
O4 A:OEX401 4.6 5.5 1.0
OE2 A:GLU189 4.7 1.9 1.0
C A:ASP342 4.7 2.7 1.0
CA A:ASP342 4.7 2.7 1.0
OE1 A:GLU333 4.8 0.5 1.0
O A:HOH515 4.8 4.9 1.0
C A:LEU343 4.9 3.6 1.0
CB C:GLU341 4.9 1.2 1.0
N A:LEU343 5.0 3.6 1.0
O A:ASP342 5.0 2.7 1.0

Manganese binding site 3 out of 8 in 7n8o

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Manganese binding site 3 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:5.5
occ:1.00
 MN3 A:OEX401 0.0 5.5 1.0
O2 A:OEX401 1.9 5.5 1.0
O4 A:OEX401 2.1 5.5 1.0
OE1 A:GLU333 2.2 0.5 1.0
O3 A:OEX401 2.2 5.5 1.0
OE2 C:GLU341 2.4 1.2 1.0
O5 A:OEX401 2.7 5.5 1.0
MN4 A:OEX401 3.0 5.5 1.0
CD A:GLU333 3.0 0.5 1.0
MN2 A:OEX401 3.1 5.5 1.0
OE2 A:GLU333 3.2 0.5 1.0
CD C:GLU341 3.3 1.2 1.0
MN1 A:OEX401 3.4 5.5 1.0
CA1 A:OEX401 3.4 5.5 1.0
OE1 C:GLU341 3.5 1.2 1.0
O C:HOH647 3.8 3.6 1.0
O1 A:OEX401 3.9 5.5 1.0
NH2 C:ARG344 4.0 2.7 1.0
OD1 A:ASP170 4.1 0.4 1.0
NE2 A:HIS337 4.2 2.0 1.0
O A:HOH509 4.2 3.8 1.0
O A:ALA344 4.3 4.4 1.0
CG A:GLU333 4.4 0.5 1.0
OD2 A:ASP170 4.4 0.4 1.0
NE2 A:HIS332 4.6 2.6 1.0
CG C:GLU341 4.7 1.2 1.0
CG A:ASP170 4.7 0.4 1.0
CE1 A:HIS337 4.8 2.0 1.0
OD1 A:ASP342 4.8 2.7 1.0
CB A:GLU333 4.8 0.5 1.0
CD2 A:HIS332 4.9 2.6 1.0
OD2 A:ASP342 5.0 2.7 1.0

Manganese binding site 4 out of 8 in 7n8o

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Manganese binding site 4 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:5.5
occ:1.00
 MN4 A:OEX401 0.0 5.5 1.0
OD1 A:ASP170 2.2 0.4 1.0
OE2 A:GLU333 2.2 0.5 1.0
O4 A:OEX401 2.2 5.5 1.0
O A:HOH566 2.5 5.2 1.0
O A:HOH607 2.7 6.3 1.0
O5 A:OEX401 2.8 5.5 1.0
MN3 A:OEX401 3.0 5.5 1.0
CD A:GLU333 3.1 0.5 1.0
CG A:ASP170 3.3 0.4 1.0
OE1 A:GLU333 3.4 0.5 1.0
O A:HOH509 3.8 3.8 1.0
CA1 A:OEX401 3.9 5.5 1.0
O2 A:OEX401 3.9 5.5 1.0
OD2 A:ASP170 3.9 0.4 1.0
O A:SER169 4.4 0.4 1.0
CG A:GLU333 4.4 0.5 1.0
O A:HOH577 4.4 5.3 1.0
OD2 A:ASP61 4.5 4.1 1.0
CB A:ASP170 4.5 0.4 1.0
NH2 C:ARG344 4.5 2.7 1.0
CA A:ASP170 4.6 0.4 1.0
O A:HOH581 4.6 3.1 1.0
O A:HOH546 4.6 5.4 1.0
O A:HOH578 4.6 5.6 1.0
O C:HOH647 4.9 3.6 1.0
OG A:SER169 4.9 0.4 1.0
OE2 C:GLU341 4.9 1.2 1.0
C A:SER169 4.9 0.4 1.0
O A:HOH538 4.9 3.0 1.0
O3 A:OEX401 5.0 5.5 1.0

Manganese binding site 5 out of 8 in 7n8o

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Manganese binding site 5 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:5.5
occ:1.00
 MN1 a:OEX401 0.0 5.5 1.0
O1 a:OEX401 2.1 5.5 1.0
OD2 a:ASP342 2.2 2.7 1.0
NE2 a:HIS332 2.3 2.6 1.0
OE2 a:GLU189 2.3 1.9 1.0
O3 a:OEX401 2.5 5.5 1.0
O5 a:OEX401 2.6 5.5 1.0
CD a:GLU189 3.0 1.9 1.0
OE1 a:GLU189 3.1 1.9 1.0
MN2 a:OEX401 3.1 5.5 1.0
CD2 a:HIS332 3.1 2.6 1.0
CG a:ASP342 3.2 2.7 1.0
CE1 a:HIS332 3.3 2.6 1.0
MN3 a:OEX401 3.4 5.5 1.0
OD1 a:ASP342 3.5 2.7 1.0
CA1 a:OEX401 3.8 5.5 1.0
O2 a:OEX401 3.9 5.5 1.0
NE2 a:HIS337 4.0 2.0 1.0
O a:HOH555 4.0 5.2 1.0
OE1 a:GLU329 4.2 4.1 1.0
OE1 a:GLU333 4.2 0.5 1.0
CG a:GLU189 4.3 1.9 1.0
CG a:HIS332 4.3 2.6 1.0
ND1 a:HIS332 4.4 2.6 1.0
CE1 a:HIS337 4.5 2.0 1.0
O a:HOH515 4.5 4.9 1.0
CB a:ASP342 4.6 2.7 1.0
CG1 a:VAL185 4.6 1.1 1.0
OE2 a:GLU329 4.7 4.1 1.0
CD a:GLU333 4.7 0.5 1.0
OE2 a:GLU333 4.7 0.5 1.0
OE1 c:GLU341 4.7 1.2 1.0
O a:ALA344 4.8 4.4 1.0
CD a:GLU329 4.8 4.1 1.0

Manganese binding site 6 out of 8 in 7n8o

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Manganese binding site 6 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:5.5
occ:1.00
 MN2 a:OEX401 0.0 5.5 1.0
O a:ALA344 1.9 4.4 1.0
O3 a:OEX401 2.1 5.5 1.0
OD1 a:ASP342 2.2 2.7 1.0
O2 a:OEX401 2.2 5.5 1.0
OE1 c:GLU341 2.3 1.2 1.0
O1 a:OEX401 2.7 5.5 1.0
MN3 a:OEX401 3.1 5.5 1.0
C a:ALA344 3.1 4.4 1.0
CG a:ASP342 3.1 2.7 1.0
MN1 a:OEX401 3.1 5.5 1.0
CD c:GLU341 3.2 1.2 1.0
OD2 a:ASP342 3.3 2.7 1.0
O c:HOH657 3.4 5.0 1.0
OE2 c:GLU341 3.5 1.2 1.0
CA1 a:OEX401 3.6 5.5 1.0
NE2 a:HIS337 3.9 2.0 1.0
O5 a:OEX401 4.0 5.5 1.0
O a:HOH555 4.1 5.2 1.0
CA a:ALA344 4.2 4.4 1.0
N a:ALA344 4.3 4.4 1.0
CD2 a:HIS337 4.4 2.0 1.0
CB a:ASP342 4.4 2.7 1.0
CG c:GLU341 4.6 1.2 1.0
CB a:ALA344 4.6 4.4 1.0
O4 a:OEX401 4.6 5.5 1.0
OE2 a:GLU189 4.7 1.9 1.0
C a:ASP342 4.7 2.7 1.0
CA a:ASP342 4.7 2.7 1.0
OE1 a:GLU333 4.8 0.5 1.0
O a:HOH515 4.8 4.9 1.0
C a:LEU343 4.9 3.6 1.0
CB c:GLU341 4.9 1.2 1.0
N a:LEU343 5.0 3.6 1.0
O a:ASP342 5.0 2.7 1.0

Manganese binding site 7 out of 8 in 7n8o

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Manganese binding site 7 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:5.5
occ:1.00
 MN3 a:OEX401 0.0 5.5 1.0
O2 a:OEX401 1.9 5.5 1.0
O4 a:OEX401 2.1 5.5 1.0
OE1 a:GLU333 2.2 0.5 1.0
O3 a:OEX401 2.2 5.5 1.0
OE2 c:GLU341 2.4 1.2 1.0
O5 a:OEX401 2.7 5.5 1.0
MN4 a:OEX401 3.0 5.5 1.0
CD a:GLU333 3.0 0.5 1.0
MN2 a:OEX401 3.1 5.5 1.0
OE2 a:GLU333 3.2 0.5 1.0
CD c:GLU341 3.3 1.2 1.0
MN1 a:OEX401 3.4 5.5 1.0
CA1 a:OEX401 3.4 5.5 1.0
OE1 c:GLU341 3.5 1.2 1.0
O c:HOH646 3.8 3.6 1.0
O1 a:OEX401 3.9 5.5 1.0
NH2 c:ARG344 4.0 2.7 1.0
OD1 a:ASP170 4.1 0.4 1.0
NE2 a:HIS337 4.2 2.0 1.0
O a:HOH509 4.2 3.8 1.0
O a:ALA344 4.3 4.4 1.0
CG a:GLU333 4.4 0.5 1.0
OD2 a:ASP170 4.4 0.4 1.0
NE2 a:HIS332 4.6 2.6 1.0
CG c:GLU341 4.7 1.2 1.0
CG a:ASP170 4.7 0.4 1.0
CE1 a:HIS337 4.8 2.0 1.0
OD1 a:ASP342 4.8 2.7 1.0
CB a:GLU333 4.8 0.5 1.0
CD2 a:HIS332 4.9 2.6 1.0
OD2 a:ASP342 5.0 2.7 1.0

Manganese binding site 8 out of 8 in 7n8o

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Manganese binding site 8 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:5.5
occ:1.00
 MN4 a:OEX401 0.0 5.5 1.0
OD1 a:ASP170 2.2 0.4 1.0
OE2 a:GLU333 2.2 0.5 1.0
O4 a:OEX401 2.2 5.5 1.0
O a:HOH567 2.5 5.2 1.0
O a:HOH607 2.7 6.3 1.0
O5 a:OEX401 2.8 5.5 1.0
MN3 a:OEX401 3.0 5.5 1.0
CD a:GLU333 3.1 0.5 1.0
CG a:ASP170 3.3 0.4 1.0
OE1 a:GLU333 3.4 0.5 1.0
O a:HOH509 3.8 3.8 1.0
CA1 a:OEX401 3.9 5.5 1.0
O2 a:OEX401 3.9 5.5 1.0
OD2 a:ASP170 3.9 0.4 1.0
O a:SER169 4.4 0.4 1.0
CG a:GLU333 4.4 0.5 1.0
O a:HOH577 4.4 5.3 1.0
OD2 a:ASP61 4.5 4.1 1.0
CB a:ASP170 4.5 0.4 1.0
NH2 c:ARG344 4.5 2.7 1.0
CA a:ASP170 4.6 0.4 1.0
O a:HOH581 4.6 3.1 1.0
O a:HOH546 4.6 5.4 1.0
O a:HOH578 4.6 5.6 1.0
O c:HOH646 4.9 3.6 1.0
OG a:SER169 4.9 0.4 1.0
OE2 c:GLU341 4.9 1.2 1.0
C a:SER169 4.9 0.4 1.0
O a:HOH538 4.9 3.0 1.0
O3 a:OEX401 5.0 5.5 1.0

Reference:

C.J.Gisriel, J.Wang, J.Liu, D.A.Flesher, K.M.Reiss, H.Huang, K.R.Yang, W.H.Armstrong, M.R.Gunner, V.S.Batista, R.J.Debus, G.W.Brudvig. High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
Page generated: Sun Oct 6 10:16:31 2024

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