Atomistry » Manganese » PDB 7mxs-7ohg » 7n8o
Atomistry »
  Manganese »
    PDB 7mxs-7ohg »
      7n8o »

Manganese in PDB 7n8o: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;

Other elements in 7n8o:

The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:

Calcium (Ca) 8 atoms
Iron (Fe) 6 atoms
Magnesium (Mg) 70 atoms
Chlorine (Cl) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 (pdb code 7n8o). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, PDB code: 7n8o:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 7n8o

Go back to Manganese Binding Sites List in 7n8o
Manganese binding site 1 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:5.5
occ:1.00
 MN1 A:OEX401 0.0 5.5 1.0
O1 A:OEX401 2.1 5.5 1.0
OD2 A:ASP342 2.2 2.7 1.0
NE2 A:HIS332 2.3 2.6 1.0
OE2 A:GLU189 2.3 1.9 1.0
O3 A:OEX401 2.5 5.5 1.0
O5 A:OEX401 2.6 5.5 1.0
CD A:GLU189 3.0 1.9 1.0
OE1 A:GLU189 3.1 1.9 1.0
MN2 A:OEX401 3.1 5.5 1.0
CD2 A:HIS332 3.1 2.6 1.0
CG A:ASP342 3.2 2.7 1.0
CE1 A:HIS332 3.3 2.6 1.0
MN3 A:OEX401 3.4 5.5 1.0
OD1 A:ASP342 3.5 2.7 1.0
CA1 A:OEX401 3.8 5.5 1.0
O2 A:OEX401 3.9 5.5 1.0
NE2 A:HIS337 4.0 2.0 1.0
O A:HOH556 4.0 5.2 1.0
OE1 A:GLU329 4.2 4.1 1.0
OE1 A:GLU333 4.2 0.5 1.0
CG A:GLU189 4.3 1.9 1.0
CG A:HIS332 4.3 2.6 1.0
ND1 A:HIS332 4.4 2.6 1.0
CE1 A:HIS337 4.5 2.0 1.0
O A:HOH515 4.5 4.9 1.0
CB A:ASP342 4.6 2.7 1.0
CG1 A:VAL185 4.6 1.1 1.0
OE2 A:GLU329 4.7 4.1 1.0
CD A:GLU333 4.7 0.5 1.0
OE2 A:GLU333 4.7 0.5 1.0
OE1 C:GLU341 4.7 1.2 1.0
O A:ALA344 4.8 4.4 1.0
CD A:GLU329 4.8 4.1 1.0

Manganese binding site 2 out of 8 in 7n8o

Go back to Manganese Binding Sites List in 7n8o
Manganese binding site 2 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:5.5
occ:1.00
 MN2 A:OEX401 0.0 5.5 1.0
O A:ALA344 1.9 4.4 1.0
O3 A:OEX401 2.1 5.5 1.0
OD1 A:ASP342 2.2 2.7 1.0
O2 A:OEX401 2.2 5.5 1.0
OE1 C:GLU341 2.3 1.2 1.0
O1 A:OEX401 2.7 5.5 1.0
MN3 A:OEX401 3.1 5.5 1.0
C A:ALA344 3.1 4.4 1.0
CG A:ASP342 3.1 2.7 1.0
MN1 A:OEX401 3.1 5.5 1.0
CD C:GLU341 3.2 1.2 1.0
OD2 A:ASP342 3.3 2.7 1.0
O C:HOH657 3.4 5.0 1.0
OE2 C:GLU341 3.5 1.2 1.0
CA1 A:OEX401 3.6 5.5 1.0
NE2 A:HIS337 3.9 2.0 1.0
O5 A:OEX401 4.0 5.5 1.0
O A:HOH556 4.1 5.2 1.0
CA A:ALA344 4.2 4.4 1.0
N A:ALA344 4.3 4.4 1.0
CD2 A:HIS337 4.4 2.0 1.0
CB A:ASP342 4.4 2.7 1.0
CG C:GLU341 4.6 1.2 1.0
CB A:ALA344 4.6 4.4 1.0
O4 A:OEX401 4.6 5.5 1.0
OE2 A:GLU189 4.7 1.9 1.0
C A:ASP342 4.7 2.7 1.0
CA A:ASP342 4.7 2.7 1.0
OE1 A:GLU333 4.8 0.5 1.0
O A:HOH515 4.8 4.9 1.0
C A:LEU343 4.9 3.6 1.0
CB C:GLU341 4.9 1.2 1.0
N A:LEU343 5.0 3.6 1.0
O A:ASP342 5.0 2.7 1.0

Manganese binding site 3 out of 8 in 7n8o

Go back to Manganese Binding Sites List in 7n8o
Manganese binding site 3 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:5.5
occ:1.00
 MN3 A:OEX401 0.0 5.5 1.0
O2 A:OEX401 1.9 5.5 1.0
O4 A:OEX401 2.1 5.5 1.0
OE1 A:GLU333 2.2 0.5 1.0
O3 A:OEX401 2.2 5.5 1.0
OE2 C:GLU341 2.4 1.2 1.0
O5 A:OEX401 2.7 5.5 1.0
MN4 A:OEX401 3.0 5.5 1.0
CD A:GLU333 3.0 0.5 1.0
MN2 A:OEX401 3.1 5.5 1.0
OE2 A:GLU333 3.2 0.5 1.0
CD C:GLU341 3.3 1.2 1.0
MN1 A:OEX401 3.4 5.5 1.0
CA1 A:OEX401 3.4 5.5 1.0
OE1 C:GLU341 3.5 1.2 1.0
O C:HOH647 3.8 3.6 1.0
O1 A:OEX401 3.9 5.5 1.0
NH2 C:ARG344 4.0 2.7 1.0
OD1 A:ASP170 4.1 0.4 1.0
NE2 A:HIS337 4.2 2.0 1.0
O A:HOH509 4.2 3.8 1.0
O A:ALA344 4.3 4.4 1.0
CG A:GLU333 4.4 0.5 1.0
OD2 A:ASP170 4.4 0.4 1.0
NE2 A:HIS332 4.6 2.6 1.0
CG C:GLU341 4.7 1.2 1.0
CG A:ASP170 4.7 0.4 1.0
CE1 A:HIS337 4.8 2.0 1.0
OD1 A:ASP342 4.8 2.7 1.0
CB A:GLU333 4.8 0.5 1.0
CD2 A:HIS332 4.9 2.6 1.0
OD2 A:ASP342 5.0 2.7 1.0

Manganese binding site 4 out of 8 in 7n8o

Go back to Manganese Binding Sites List in 7n8o
Manganese binding site 4 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:5.5
occ:1.00
 MN4 A:OEX401 0.0 5.5 1.0
OD1 A:ASP170 2.2 0.4 1.0
OE2 A:GLU333 2.2 0.5 1.0
O4 A:OEX401 2.2 5.5 1.0
O A:HOH566 2.5 5.2 1.0
O A:HOH607 2.7 6.3 1.0
O5 A:OEX401 2.8 5.5 1.0
MN3 A:OEX401 3.0 5.5 1.0
CD A:GLU333 3.1 0.5 1.0
CG A:ASP170 3.3 0.4 1.0
OE1 A:GLU333 3.4 0.5 1.0
O A:HOH509 3.8 3.8 1.0
CA1 A:OEX401 3.9 5.5 1.0
O2 A:OEX401 3.9 5.5 1.0
OD2 A:ASP170 3.9 0.4 1.0
O A:SER169 4.4 0.4 1.0
CG A:GLU333 4.4 0.5 1.0
O A:HOH577 4.4 5.3 1.0
OD2 A:ASP61 4.5 4.1 1.0
CB A:ASP170 4.5 0.4 1.0
NH2 C:ARG344 4.5 2.7 1.0
CA A:ASP170 4.6 0.4 1.0
O A:HOH581 4.6 3.1 1.0
O A:HOH546 4.6 5.4 1.0
O A:HOH578 4.6 5.6 1.0
O C:HOH647 4.9 3.6 1.0
OG A:SER169 4.9 0.4 1.0
OE2 C:GLU341 4.9 1.2 1.0
C A:SER169 4.9 0.4 1.0
O A:HOH538 4.9 3.0 1.0
O3 A:OEX401 5.0 5.5 1.0

Manganese binding site 5 out of 8 in 7n8o

Go back to Manganese Binding Sites List in 7n8o
Manganese binding site 5 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:5.5
occ:1.00
 MN1 a:OEX401 0.0 5.5 1.0
O1 a:OEX401 2.1 5.5 1.0
OD2 a:ASP342 2.2 2.7 1.0
NE2 a:HIS332 2.3 2.6 1.0
OE2 a:GLU189 2.3 1.9 1.0
O3 a:OEX401 2.5 5.5 1.0
O5 a:OEX401 2.6 5.5 1.0
CD a:GLU189 3.0 1.9 1.0
OE1 a:GLU189 3.1 1.9 1.0
MN2 a:OEX401 3.1 5.5 1.0
CD2 a:HIS332 3.1 2.6 1.0
CG a:ASP342 3.2 2.7 1.0
CE1 a:HIS332 3.3 2.6 1.0
MN3 a:OEX401 3.4 5.5 1.0
OD1 a:ASP342 3.5 2.7 1.0
CA1 a:OEX401 3.8 5.5 1.0
O2 a:OEX401 3.9 5.5 1.0
NE2 a:HIS337 4.0 2.0 1.0
O a:HOH555 4.0 5.2 1.0
OE1 a:GLU329 4.2 4.1 1.0
OE1 a:GLU333 4.2 0.5 1.0
CG a:GLU189 4.3 1.9 1.0
CG a:HIS332 4.3 2.6 1.0
ND1 a:HIS332 4.4 2.6 1.0
CE1 a:HIS337 4.5 2.0 1.0
O a:HOH515 4.5 4.9 1.0
CB a:ASP342 4.6 2.7 1.0
CG1 a:VAL185 4.6 1.1 1.0
OE2 a:GLU329 4.7 4.1 1.0
CD a:GLU333 4.7 0.5 1.0
OE2 a:GLU333 4.7 0.5 1.0
OE1 c:GLU341 4.7 1.2 1.0
O a:ALA344 4.8 4.4 1.0
CD a:GLU329 4.8 4.1 1.0

Manganese binding site 6 out of 8 in 7n8o

Go back to Manganese Binding Sites List in 7n8o
Manganese binding site 6 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:5.5
occ:1.00
 MN2 a:OEX401 0.0 5.5 1.0
O a:ALA344 1.9 4.4 1.0
O3 a:OEX401 2.1 5.5 1.0
OD1 a:ASP342 2.2 2.7 1.0
O2 a:OEX401 2.2 5.5 1.0
OE1 c:GLU341 2.3 1.2 1.0
O1 a:OEX401 2.7 5.5 1.0
MN3 a:OEX401 3.1 5.5 1.0
C a:ALA344 3.1 4.4 1.0
CG a:ASP342 3.1 2.7 1.0
MN1 a:OEX401 3.1 5.5 1.0
CD c:GLU341 3.2 1.2 1.0
OD2 a:ASP342 3.3 2.7 1.0
O c:HOH657 3.4 5.0 1.0
OE2 c:GLU341 3.5 1.2 1.0
CA1 a:OEX401 3.6 5.5 1.0
NE2 a:HIS337 3.9 2.0 1.0
O5 a:OEX401 4.0 5.5 1.0
O a:HOH555 4.1 5.2 1.0
CA a:ALA344 4.2 4.4 1.0
N a:ALA344 4.3 4.4 1.0
CD2 a:HIS337 4.4 2.0 1.0
CB a:ASP342 4.4 2.7 1.0
CG c:GLU341 4.6 1.2 1.0
CB a:ALA344 4.6 4.4 1.0
O4 a:OEX401 4.6 5.5 1.0
OE2 a:GLU189 4.7 1.9 1.0
C a:ASP342 4.7 2.7 1.0
CA a:ASP342 4.7 2.7 1.0
OE1 a:GLU333 4.8 0.5 1.0
O a:HOH515 4.8 4.9 1.0
C a:LEU343 4.9 3.6 1.0
CB c:GLU341 4.9 1.2 1.0
N a:LEU343 5.0 3.6 1.0
O a:ASP342 5.0 2.7 1.0

Manganese binding site 7 out of 8 in 7n8o

Go back to Manganese Binding Sites List in 7n8o
Manganese binding site 7 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:5.5
occ:1.00
 MN3 a:OEX401 0.0 5.5 1.0
O2 a:OEX401 1.9 5.5 1.0
O4 a:OEX401 2.1 5.5 1.0
OE1 a:GLU333 2.2 0.5 1.0
O3 a:OEX401 2.2 5.5 1.0
OE2 c:GLU341 2.4 1.2 1.0
O5 a:OEX401 2.7 5.5 1.0
MN4 a:OEX401 3.0 5.5 1.0
CD a:GLU333 3.0 0.5 1.0
MN2 a:OEX401 3.1 5.5 1.0
OE2 a:GLU333 3.2 0.5 1.0
CD c:GLU341 3.3 1.2 1.0
MN1 a:OEX401 3.4 5.5 1.0
CA1 a:OEX401 3.4 5.5 1.0
OE1 c:GLU341 3.5 1.2 1.0
O c:HOH646 3.8 3.6 1.0
O1 a:OEX401 3.9 5.5 1.0
NH2 c:ARG344 4.0 2.7 1.0
OD1 a:ASP170 4.1 0.4 1.0
NE2 a:HIS337 4.2 2.0 1.0
O a:HOH509 4.2 3.8 1.0
O a:ALA344 4.3 4.4 1.0
CG a:GLU333 4.4 0.5 1.0
OD2 a:ASP170 4.4 0.4 1.0
NE2 a:HIS332 4.6 2.6 1.0
CG c:GLU341 4.7 1.2 1.0
CG a:ASP170 4.7 0.4 1.0
CE1 a:HIS337 4.8 2.0 1.0
OD1 a:ASP342 4.8 2.7 1.0
CB a:GLU333 4.8 0.5 1.0
CD2 a:HIS332 4.9 2.6 1.0
OD2 a:ASP342 5.0 2.7 1.0

Manganese binding site 8 out of 8 in 7n8o

Go back to Manganese Binding Sites List in 7n8o
Manganese binding site 8 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:5.5
occ:1.00
 MN4 a:OEX401 0.0 5.5 1.0
OD1 a:ASP170 2.2 0.4 1.0
OE2 a:GLU333 2.2 0.5 1.0
O4 a:OEX401 2.2 5.5 1.0
O a:HOH567 2.5 5.2 1.0
O a:HOH607 2.7 6.3 1.0
O5 a:OEX401 2.8 5.5 1.0
MN3 a:OEX401 3.0 5.5 1.0
CD a:GLU333 3.1 0.5 1.0
CG a:ASP170 3.3 0.4 1.0
OE1 a:GLU333 3.4 0.5 1.0
O a:HOH509 3.8 3.8 1.0
CA1 a:OEX401 3.9 5.5 1.0
O2 a:OEX401 3.9 5.5 1.0
OD2 a:ASP170 3.9 0.4 1.0
O a:SER169 4.4 0.4 1.0
CG a:GLU333 4.4 0.5 1.0
O a:HOH577 4.4 5.3 1.0
OD2 a:ASP61 4.5 4.1 1.0
CB a:ASP170 4.5 0.4 1.0
NH2 c:ARG344 4.5 2.7 1.0
CA a:ASP170 4.6 0.4 1.0
O a:HOH581 4.6 3.1 1.0
O a:HOH546 4.6 5.4 1.0
O a:HOH578 4.6 5.6 1.0
O c:HOH646 4.9 3.6 1.0
OG a:SER169 4.9 0.4 1.0
OE2 c:GLU341 4.9 1.2 1.0
C a:SER169 4.9 0.4 1.0
O a:HOH538 4.9 3.0 1.0
O3 a:OEX401 5.0 5.5 1.0

Reference:

C.J.Gisriel, J.Wang, J.Liu, D.A.Flesher, K.M.Reiss, H.Huang, K.R.Yang, W.H.Armstrong, M.R.Gunner, V.S.Batista, R.J.Debus, G.W.Brudvig. High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
Page generated: Sun Oct 6 10:16:31 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy