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Manganese in PDB 7n0z: Structure of PPM1H Phosphatase with Manganese Ions at the Active Site

Enzymatic activity of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site

All present enzymatic activity of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site:
3.1.3.16;

Protein crystallography data

The structure of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site, PDB code: 7n0z was solved by A.R.Khan, D.Waschbusch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.93 / 2.19
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.779, 101.159, 148.946, 90, 90, 90
R / Rfree (%) 19.5 / 23.1

Other elements in 7n0z:

The structure of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of PPM1H Phosphatase with Manganese Ions at the Active Site (pdb code 7n0z). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Structure of PPM1H Phosphatase with Manganese Ions at the Active Site, PDB code: 7n0z:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;

Manganese binding site 1 out of 6 in 7n0z

Go back to Manganese Binding Sites List in 7n0z
Manganese binding site 1 out of 6 in the Structure of PPM1H Phosphatase with Manganese Ions at the Active Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:43.9
occ:1.00
 OD1 A:ASP437 2.1 44.1 1.0
OD2 A:ASP498 2.2 39.2 1.0
O A:HOH739 2.2 45.7 1.0
OD2 A:ASP151 2.2 42.2 1.0
O A:HOH770 2.3 41.3 1.0
O A:HOH729 2.3 36.7 1.0
CG A:ASP151 3.1 49.8 1.0
CG A:ASP437 3.2 42.1 1.0
CG A:ASP498 3.2 37.6 1.0
OD1 A:ASP151 3.3 48.4 1.0
OD1 A:ASP498 3.5 43.4 1.0
OD2 A:ASP437 3.5 43.2 1.0
O A:HOH786 3.7 37.8 1.0
MN A:MN602 3.8 47.7 1.0
N A:GLY438 4.1 41.3 1.0
O A:HOH704 4.2 48.0 1.0
O A:HOH702 4.3 41.7 1.0
O A:HOH758 4.3 38.8 1.0
O A:ASP499 4.4 44.3 1.0
OD2 A:ASP94 4.5 51.0 1.0
CB A:ASP151 4.5 43.5 1.0
CB A:ASP437 4.5 43.1 1.0
N A:ASP437 4.5 41.7 1.0
CB A:ASP498 4.5 42.5 1.0
C A:ASP437 4.6 46.3 1.0
CA A:ASP437 4.8 35.2 1.0
CA A:GLY438 4.8 46.8 1.0
CB A:THR436 4.9 41.7 1.0

Manganese binding site 2 out of 6 in 7n0z

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Manganese binding site 2 out of 6 in the Structure of PPM1H Phosphatase with Manganese Ions at the Active Site


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn602

b:47.7
occ:1.00
 OD1 A:ASP151 2.1 48.4 1.0
O A:HOH786 2.2 37.8 1.0
O A:HOH739 2.2 45.7 1.0
O A:GLY152 2.3 43.9 1.0
O A:HOH710 2.4 37.4 1.0
O A:HOH702 2.4 41.7 1.0
CG A:ASP151 3.2 49.8 1.0
C A:GLY152 3.4 44.1 1.0
OD2 A:ASP151 3.8 42.2 1.0
MN A:MN601 3.8 43.9 1.0
O A:HOH770 3.9 41.3 1.0
N A:GLY152 4.0 39.0 1.0
C A:ASP151 4.1 40.0 1.0
O A:HOH711 4.1 44.0 1.0
OD2 A:ASP94 4.2 51.0 1.0
OE1 A:GLU93 4.2 53.8 1.0
O A:HOH718 4.2 48.4 1.0
CB A:GLU93 4.3 38.4 1.0
CA A:GLY152 4.3 39.3 1.0
N A:HIS153 4.4 41.3 1.0
CB A:ASP151 4.4 43.5 1.0
O A:HOH729 4.5 36.7 1.0
O A:ASP151 4.5 36.6 1.0
OD2 A:ASP499 4.5 41.4 1.0
CA A:HIS153 4.5 44.9 1.0
CA A:ASP151 4.5 38.7 1.0
OD1 A:ASP498 4.6 43.4 1.0
CB A:HIS153 4.7 40.9 1.0
C A:GLU93 4.9 47.3 1.0

Manganese binding site 3 out of 6 in 7n0z

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Manganese binding site 3 out of 6 in the Structure of PPM1H Phosphatase with Manganese Ions at the Active Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn603

b:43.6
occ:1.00
 O A:HOH741 2.0 43.5 1.0
OD2 A:ASP288 2.1 41.8 1.0
OD2 A:ASP437 2.2 43.2 1.0
O A:HOH801 2.6 50.1 1.0
O A:HOH800 2.7 40.7 1.0
O A:HOH799 3.0 34.3 1.0
CG A:ASP288 3.2 43.1 1.0
CG A:ASP437 3.3 42.1 1.0
O A:HOH798 3.7 47.9 1.0
OD1 A:ASP288 3.8 43.8 1.0
CB A:ASP437 3.8 43.1 1.0
O A:HOH770 4.0 41.3 1.0
OD2 A:ASP441 4.3 48.6 1.0
OD1 A:ASP437 4.3 44.1 1.0
CB A:ASP288 4.4 40.2 1.0
O A:HOH762 4.4 45.7 1.0
OD1 A:ASP441 4.7 50.7 1.0
CG A:ASP441 4.9 51.4 1.0

Manganese binding site 4 out of 6 in 7n0z

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Manganese binding site 4 out of 6 in the Structure of PPM1H Phosphatase with Manganese Ions at the Active Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn601

b:42.7
occ:1.00
 O B:HOH758 2.0 46.6 1.0
OD2 B:ASP498 2.2 46.4 1.0
OD1 B:ASP437 2.2 39.7 1.0
O B:HOH710 2.3 40.5 1.0
OD2 B:ASP151 2.3 42.4 1.0
O B:HOH742 2.3 47.0 1.0
CG B:ASP151 3.1 44.0 1.0
CG B:ASP498 3.1 45.6 1.0
OD1 B:ASP151 3.1 41.8 1.0
CG B:ASP437 3.2 39.4 1.0
OD1 B:ASP498 3.3 48.8 1.0
OD2 B:ASP437 3.5 46.1 1.0
MN B:MN602 3.7 49.1 1.0
O B:HOH782 3.8 43.3 1.0
N B:GLY438 4.2 44.0 1.0
O B:HOH718 4.2 45.6 1.0
O B:HOH747 4.4 38.5 1.0
O B:ASP499 4.4 47.6 1.0
O B:HOH712 4.4 50.8 1.0
CB B:ASP498 4.5 53.5 1.0
CB B:ASP151 4.5 45.4 1.0
OD1 B:ASP94 4.6 51.2 1.0
CB B:ASP437 4.6 40.6 1.0
N B:ASP437 4.6 39.9 1.0
C B:ASP437 4.8 44.0 1.0
CA B:GLY438 4.8 48.9 1.0
CA B:ASP437 4.9 47.6 1.0
CB B:THR436 4.9 38.8 1.0
O B:HOH735 4.9 41.5 1.0
OG1 B:THR436 4.9 43.0 1.0

Manganese binding site 5 out of 6 in 7n0z

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Manganese binding site 5 out of 6 in the Structure of PPM1H Phosphatase with Manganese Ions at the Active Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn602

b:49.1
occ:1.00
 OD1 B:ASP151 2.1 41.8 1.0
O B:HOH706 2.1 49.4 1.0
O B:GLY152 2.2 50.1 1.0
O B:HOH782 2.2 43.3 1.0
O B:HOH710 2.2 40.5 1.0
O B:HOH718 2.2 45.6 1.0
CG B:ASP151 3.3 44.0 1.0
C B:GLY152 3.4 46.3 1.0
MN B:MN601 3.7 42.7 1.0
O B:HOH758 3.8 46.6 1.0
OD2 B:ASP151 3.9 42.4 1.0
N B:GLY152 3.9 44.9 1.0
C B:ASP151 4.1 41.4 1.0
OE2 B:GLU93 4.1 63.3 1.0
O B:HOH759 4.2 45.1 1.0
CB B:GLU93 4.2 48.9 1.0
CA B:GLY152 4.2 44.5 1.0
O B:HOH743 4.3 55.1 1.0
OD1 B:ASP94 4.3 51.2 1.0
N B:HIS153 4.3 47.8 1.0
OD1 B:ASP498 4.4 48.8 1.0
OD2 B:ASP499 4.5 51.9 1.0
O B:HOH742 4.5 47.0 1.0
O B:ASP151 4.5 46.1 1.0
CB B:ASP151 4.5 45.4 1.0
CA B:HIS153 4.5 44.2 1.0
CA B:ASP151 4.5 40.3 1.0
CB B:HIS153 4.7 42.2 1.0
O B:GLU93 4.8 47.2 1.0
C B:GLU93 4.8 49.0 1.0
OD2 B:ASP498 5.0 46.4 1.0

Manganese binding site 6 out of 6 in 7n0z

Go back to Manganese Binding Sites List in 7n0z
Manganese binding site 6 out of 6 in the Structure of PPM1H Phosphatase with Manganese Ions at the Active Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Structure of PPM1H Phosphatase with Manganese Ions at the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn603

b:42.2
occ:1.00
 O B:HOH778 2.0 37.7 1.0
OD2 B:ASP288 2.1 46.9 1.0
OD2 B:ASP437 2.1 46.1 1.0
O B:HOH740 2.3 42.0 1.0
O B:HOH789 2.4 42.3 1.0
O B:HOH801 2.5 43.4 1.0
CG B:ASP437 3.2 39.4 1.0
CG B:ASP288 3.2 43.5 1.0
CB B:ASP437 3.6 40.6 1.0
OD1 B:ASP288 3.7 48.2 1.0
O B:HOH735 4.0 41.5 1.0
O B:HOH804 4.0 42.8 1.0
O B:HOH806 4.1 46.0 1.0
OD2 B:ASP441 4.1 51.6 1.0
O B:HOH758 4.2 46.6 1.0
OD1 B:ASP437 4.3 39.7 1.0
CB B:ASP288 4.4 44.2 1.0
O B:HOH777 4.4 53.7 1.0
OD1 B:ASP441 4.5 48.3 1.0
CG B:ASP441 4.7 54.6 1.0

Reference:

A.R.Khan, D.Waschbusch. Structure of PPM1H Phosphatase with Manganese Ions at the Active Site To Be Published.
Page generated: Sun Oct 6 10:13:09 2024

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