Manganese in PDB 7my5: The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988503

The structure of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988503, PDB code: 7my5 was solved by M.G.Cuypers, J.P.Slavish, Z.Rankovic, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	66.54 / 2.38
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	89.591, 89.591, 133.076, 90, 90, 90
R / Rfree (%)	21.3 / 25.8

The binding sites of Manganese atom in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988503 (pdb code 7my5). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988503, PDB code: 7my5:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988503


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988503 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:55.2 occ:1.00 OE2 A:GLU119 2.1 64.8 1.0 O13 A:Y5V203 2.1 73.8 1.0 O15 A:Y5V203 2.2 57.1 1.0 OD2 A:ASP108 2.2 59.7 1.0 O A:ILE120 2.2 62.9 1.0 NE2 A:HIS41 2.3 64.2 1.0 C14 A:Y5V203 2.8 67.6 1.0 C12 A:Y5V203 2.9 56.8 1.0 CG A:ASP108 3.0 57.2 1.0 CE1 A:HIS41 3.0 53.9 1.0 CD A:GLU119 3.1 60.9 1.0 OD1 A:ASP108 3.1 59.9 1.0 C A:ILE120 3.3 64.8 1.0 CD2 A:HIS41 3.3 62.4 1.0 OE1 A:GLU119 3.5 64.1 1.0 N A:ILE120 3.6 50.9 1.0 O A:HOH303 3.7 63.3 1.0 MN A:MN202 3.8 72.1 1.0 CA A:ILE120 3.9 54.3 1.0 ND1 A:HIS41 4.2 59.0 1.0 N16 A:Y5V203 4.3 67.4 1.0 CG A:GLU119 4.3 61.8 1.0 C11 A:Y5V203 4.3 84.2 1.0 CB A:ILE120 4.3 62.7 1.0 CG A:HIS41 4.3 57.6 1.0 N A:GLY121 4.4 63.5 1.0 CB A:ASP108 4.4 59.3 1.0 C A:GLU119 4.5 57.2 1.0 O10 A:Y5V203 4.7 83.7 1.0 O A:HOH304 4.7 56.9 1.0 CA A:GLY121 4.8 51.5 1.0 CA A:GLU119 4.9 56.7 1.0

Manganese binding site 2 out of 2 in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988503


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988503 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn202 b:72.1 occ:1.00 O10 A:Y5V203 1.9 83.7 1.0 O A:HOH303 2.2 63.3 1.0 O13 A:Y5V203 2.3 73.8 1.0 OD1 A:ASP108 2.3 59.9 1.0 OE1 A:GLU80 2.3 69.7 1.0 O A:HOH301 2.6 59.4 1.0 C09 A:Y5V203 2.9 79.2 1.0 C12 A:Y5V203 3.2 56.8 1.0 CG A:ASP108 3.4 57.2 1.0 CD A:GLU80 3.5 67.2 1.0 C11 A:Y5V203 3.5 84.2 1.0 CE1 A:HIS41 3.8 53.9 1.0 MN A:MN201 3.8 55.2 1.0 OD2 A:ASP108 3.9 59.7 1.0 N08 A:Y5V203 4.2 92.5 1.0 O A:LEU106 4.2 68.2 1.0 O A:PRO107 4.2 56.7 1.0 CG A:GLU80 4.3 66.2 1.0 CB A:GLU80 4.3 53.8 1.0 NE2 A:HIS41 4.4 64.2 1.0 OE2 A:GLU80 4.4 80.6 1.0 C A:PRO107 4.5 62.2 1.0 OE1 A:GLU119 4.5 64.1 1.0 CB A:ASP108 4.5 59.3 1.0 CA A:ASP108 4.5 55.2 1.0 C14 A:Y5V203 4.6 67.6 1.0 C07 A:Y5V203 4.6 102.1 1.0 N A:ASP108 4.6 49.9 1.0 ND1 A:HIS41 4.7 59.0 1.0 OE2 A:GLU119 4.7 64.8 1.0 O15 A:Y5V203 4.9 57.1 1.0 N18 A:Y5V203 5.0 90.7 1.0

M.G.Cuypers, J.P.Slavish, Z.Rankovic, S.W.White. The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988503 To Be Published.