Manganese in PDB 7mpq: Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
Protein crystallography data
The structure of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+, PDB code: 7mpq
was solved by
J.D.Lormand,
H.Sondermann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
128.34 /
2.35
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
71.681,
127.799,
128.809,
90,
94.87,
90
|
|
R / Rfree (%)
|
16.2 /
20.6
|
Manganese Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Manganese atom in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
(pdb code 7mpq). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 16 binding sites of Manganese where determined in the
Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+, PDB code: 7mpq:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Manganese binding site 1 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 1 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn303
b:80.2
occ:1.00
|
OD2
|
A:ASP155
|
2.2
|
72.6
|
1.0
|
|
OD2
|
A:ASP25
|
2.2
|
48.2
|
1.0
|
|
OE2
|
A:GLU27
|
2.4
|
43.4
|
1.0
|
|
O2P
|
A:5GP301
|
2.5
|
72.5
|
1.0
|
|
O1P
|
A:5GP301
|
3.0
|
75.2
|
1.0
|
|
P
|
A:5GP301
|
3.2
|
77.8
|
1.0
|
|
CG
|
A:ASP155
|
3.2
|
62.0
|
1.0
|
|
CG
|
A:ASP25
|
3.4
|
41.8
|
1.0
|
|
CD
|
A:GLU27
|
3.4
|
41.9
|
1.0
|
|
CB
|
A:ASP155
|
3.6
|
47.0
|
1.0
|
|
O
|
A:HOH486
|
3.6
|
50.7
|
1.0
|
|
CE1
|
A:TYR151
|
3.7
|
51.5
|
1.0
|
|
OE1
|
A:GLU27
|
3.7
|
44.1
|
1.0
|
|
OH
|
A:TYR151
|
3.8
|
66.2
|
1.0
|
|
NE2
|
A:GLN42
|
3.9
|
43.5
|
1.0
|
|
OD1
|
A:ASP25
|
3.9
|
42.7
|
1.0
|
|
MN
|
A:MN304
|
3.9
|
78.3
|
1.0
|
|
O
|
A:THR26
|
3.9
|
36.1
|
1.0
|
|
O3P
|
A:5GP301
|
4.0
|
83.5
|
1.0
|
|
CZ
|
A:TYR151
|
4.1
|
59.7
|
1.0
|
|
OD1
|
A:ASP155
|
4.3
|
71.3
|
1.0
|
|
O5'
|
A:5GP301
|
4.5
|
81.2
|
1.0
|
|
CB
|
A:ASP25
|
4.6
|
42.5
|
1.0
|
|
CD1
|
A:TYR151
|
4.6
|
50.4
|
1.0
|
|
CG
|
A:GLU27
|
4.7
|
37.6
|
1.0
|
|
O
|
A:HOH470
|
4.8
|
48.8
|
1.0
|
|
C5'
|
A:5GP301
|
4.8
|
77.0
|
1.0
|
|
C
|
A:THR26
|
4.9
|
34.6
|
1.0
|
|
Manganese binding site 2 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 2 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn304
b:78.3
occ:1.00
|
OD1
|
A:ASP25
|
2.2
|
42.7
|
1.0
|
|
O2P
|
A:5GP301
|
2.4
|
72.5
|
1.0
|
|
O3'
|
A:5GP302
|
2.4
|
84.7
|
0.9
|
|
O
|
A:HOH486
|
2.9
|
50.7
|
1.0
|
|
CG
|
A:ASP25
|
3.1
|
41.8
|
1.0
|
|
C3'
|
A:5GP302
|
3.2
|
84.4
|
0.9
|
|
OD2
|
A:ASP25
|
3.4
|
48.2
|
1.0
|
|
OD1
|
A:ASP84
|
3.5
|
52.2
|
1.0
|
|
OD2
|
A:ASP84
|
3.5
|
61.4
|
1.0
|
|
P
|
A:5GP301
|
3.8
|
77.8
|
1.0
|
|
MN
|
A:MN303
|
3.9
|
80.2
|
1.0
|
|
CG
|
A:ASP84
|
3.9
|
49.6
|
1.0
|
|
O
|
A:THR26
|
4.0
|
36.1
|
1.0
|
|
O
|
A:HOH427
|
4.2
|
28.7
|
1.0
|
|
C4'
|
A:5GP302
|
4.2
|
81.6
|
0.9
|
|
O3P
|
A:5GP301
|
4.3
|
83.5
|
1.0
|
|
C5'
|
A:5GP301
|
4.3
|
77.0
|
1.0
|
|
O5'
|
A:5GP301
|
4.3
|
81.2
|
1.0
|
|
O
|
A:HOH456
|
4.3
|
40.5
|
1.0
|
|
C2'
|
A:5GP302
|
4.3
|
95.3
|
0.9
|
|
O2'
|
A:5GP302
|
4.4
|
94.0
|
0.9
|
|
N
|
A:THR26
|
4.4
|
31.2
|
1.0
|
|
O
|
A:HIS79
|
4.4
|
35.5
|
1.0
|
|
CB
|
A:ASP25
|
4.5
|
42.5
|
1.0
|
|
O
|
A:HOH470
|
4.8
|
48.8
|
1.0
|
|
CA
|
A:ASP25
|
4.9
|
30.6
|
1.0
|
|
OD2
|
A:ASP155
|
4.9
|
72.6
|
1.0
|
|
O1P
|
A:5GP301
|
4.9
|
75.2
|
1.0
|
|
OG1
|
A:THR26
|
5.0
|
36.8
|
1.0
|
|
Manganese binding site 3 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 3 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn302
b:84.4
occ:1.00
|
OD2
|
C:ASP155
|
2.0
|
69.1
|
1.0
|
|
O3P
|
C:5GP301
|
2.3
|
87.8
|
1.0
|
|
OD2
|
C:ASP25
|
2.4
|
46.1
|
1.0
|
|
OE2
|
C:GLU27
|
2.5
|
42.2
|
1.0
|
|
CG
|
C:ASP155
|
3.0
|
54.5
|
1.0
|
|
O2P
|
C:5GP301
|
3.0
|
76.1
|
1.0
|
|
P
|
C:5GP301
|
3.1
|
78.0
|
1.0
|
|
CB
|
C:ASP155
|
3.3
|
39.5
|
1.0
|
|
O
|
C:HOH430
|
3.4
|
56.7
|
1.0
|
|
CD
|
C:GLU27
|
3.5
|
41.4
|
1.0
|
|
CG
|
C:ASP25
|
3.5
|
35.5
|
1.0
|
|
OH
|
C:TYR151
|
3.7
|
40.4
|
1.0
|
|
OE1
|
C:GLU27
|
3.8
|
35.0
|
1.0
|
|
MN
|
C:MN303
|
3.9
|
78.3
|
1.0
|
|
CE1
|
C:TYR151
|
3.9
|
40.2
|
1.0
|
|
O5'
|
C:5GP301
|
3.9
|
87.4
|
1.0
|
|
OD1
|
C:ASP25
|
4.0
|
50.5
|
1.0
|
|
NE2
|
C:GLN42
|
4.0
|
28.2
|
1.0
|
|
CZ
|
C:TYR151
|
4.0
|
42.0
|
1.0
|
|
OD1
|
C:ASP155
|
4.1
|
65.7
|
1.0
|
|
O
|
C:THR26
|
4.2
|
32.3
|
1.0
|
|
O1P
|
C:5GP301
|
4.3
|
80.9
|
1.0
|
|
CB
|
C:ASP25
|
4.7
|
33.6
|
1.0
|
|
O
|
C:HOH427
|
4.7
|
44.5
|
1.0
|
|
CD1
|
C:TYR151
|
4.8
|
38.8
|
1.0
|
|
CG
|
C:GLU27
|
4.8
|
31.4
|
1.0
|
|
CA
|
C:ASP155
|
4.8
|
36.8
|
1.0
|
|
Manganese binding site 4 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 4 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn303
b:78.3
occ:1.00
|
OD1
|
C:ASP25
|
2.3
|
50.5
|
1.0
|
|
O3P
|
C:5GP301
|
2.4
|
87.8
|
1.0
|
|
O
|
C:HOH430
|
2.4
|
56.7
|
1.0
|
|
O
|
C:HOH402
|
2.6
|
53.9
|
1.0
|
|
O3'
|
K:5GP301
|
2.7
|
75.2
|
0.9
|
|
C3'
|
K:5GP301
|
3.3
|
87.1
|
0.9
|
|
CG
|
C:ASP25
|
3.3
|
35.5
|
1.0
|
|
OD2
|
C:ASP25
|
3.5
|
46.1
|
1.0
|
|
P
|
C:5GP301
|
3.6
|
78.0
|
1.0
|
|
OD1
|
C:ASP84
|
3.8
|
47.9
|
1.0
|
|
OD2
|
C:ASP84
|
3.8
|
57.2
|
1.0
|
|
O5'
|
C:5GP301
|
3.8
|
87.4
|
1.0
|
|
MN
|
C:MN302
|
3.9
|
84.4
|
1.0
|
|
O
|
C:THR26
|
4.0
|
32.3
|
1.0
|
|
O1P
|
C:5GP301
|
4.1
|
80.9
|
1.0
|
|
C5'
|
C:5GP301
|
4.1
|
67.1
|
1.0
|
|
O
|
C:HOH441
|
4.2
|
33.3
|
1.0
|
|
CG
|
C:ASP84
|
4.2
|
43.1
|
1.0
|
|
C4'
|
K:5GP301
|
4.3
|
90.2
|
0.9
|
|
O
|
C:HIS79
|
4.4
|
44.1
|
1.0
|
|
O
|
C:HOH468
|
4.4
|
42.1
|
1.0
|
|
C2'
|
K:5GP301
|
4.5
|
96.7
|
0.9
|
|
O2'
|
K:5GP301
|
4.6
|
98.0
|
0.9
|
|
N
|
C:THR26
|
4.6
|
32.4
|
1.0
|
|
CB
|
C:ASP25
|
4.6
|
33.6
|
1.0
|
|
O
|
C:HOH427
|
4.7
|
44.5
|
1.0
|
|
OD2
|
C:ASP155
|
4.9
|
69.1
|
1.0
|
|
O2P
|
C:5GP301
|
4.9
|
76.1
|
1.0
|
|
C5'
|
K:5GP301
|
5.0
|
79.0
|
0.9
|
|
Manganese binding site 5 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 5 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn303
b:75.2
occ:1.00
|
O1P
|
E:5GP301
|
2.3
|
83.2
|
1.0
|
|
OD1
|
E:ASP25
|
2.3
|
42.5
|
1.0
|
|
O
|
E:HOH401
|
2.4
|
46.6
|
1.0
|
|
O
|
E:HOH465
|
2.4
|
49.8
|
1.0
|
|
O3'
|
E:5GP302
|
2.8
|
76.5
|
0.8
|
|
CG
|
E:ASP25
|
3.4
|
49.8
|
1.0
|
|
C3'
|
E:5GP302
|
3.5
|
81.3
|
0.8
|
|
P
|
E:5GP301
|
3.6
|
81.8
|
1.0
|
|
OD1
|
E:ASP84
|
3.7
|
55.3
|
1.0
|
|
OD2
|
E:ASP84
|
3.7
|
61.3
|
1.0
|
|
MN
|
E:MN304
|
3.8
|
88.2
|
1.0
|
|
OD2
|
E:ASP25
|
3.8
|
57.8
|
1.0
|
|
O
|
E:THR26
|
3.9
|
39.6
|
1.0
|
|
O
|
E:HOH452
|
4.0
|
39.1
|
1.0
|
|
O5'
|
E:5GP301
|
4.0
|
84.6
|
1.0
|
|
CG
|
E:ASP84
|
4.1
|
47.0
|
1.0
|
|
C5'
|
E:5GP301
|
4.1
|
83.8
|
1.0
|
|
O3P
|
E:5GP301
|
4.2
|
83.0
|
1.0
|
|
O
|
E:HOH431
|
4.3
|
42.1
|
1.0
|
|
O
|
E:HIS79
|
4.4
|
37.7
|
1.0
|
|
C4'
|
E:5GP302
|
4.4
|
83.0
|
0.8
|
|
N
|
E:THR26
|
4.5
|
32.5
|
1.0
|
|
CB
|
E:ASP25
|
4.6
|
44.2
|
1.0
|
|
O
|
E:HOH410
|
4.7
|
49.6
|
1.0
|
|
C2'
|
E:5GP302
|
4.8
|
88.7
|
0.8
|
|
OD2
|
E:ASP155
|
4.8
|
56.0
|
1.0
|
|
O2P
|
E:5GP301
|
4.8
|
70.3
|
1.0
|
|
O2'
|
E:5GP302
|
4.9
|
92.5
|
0.8
|
|
CA
|
E:ASP25
|
5.0
|
40.0
|
1.0
|
|
C
|
E:THR26
|
5.0
|
37.8
|
1.0
|
|
Manganese binding site 6 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 6 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn304
b:88.2
occ:1.00
|
OD2
|
E:ASP155
|
2.3
|
56.0
|
1.0
|
|
OD2
|
E:ASP25
|
2.3
|
57.8
|
1.0
|
|
OE2
|
E:GLU27
|
2.4
|
48.6
|
1.0
|
|
O1P
|
E:5GP301
|
2.4
|
83.2
|
1.0
|
|
O2P
|
E:5GP301
|
3.1
|
70.3
|
1.0
|
|
P
|
E:5GP301
|
3.1
|
81.8
|
1.0
|
|
CG
|
E:ASP155
|
3.2
|
56.4
|
1.0
|
|
CG
|
E:ASP25
|
3.3
|
49.8
|
1.0
|
|
CD
|
E:GLU27
|
3.4
|
46.3
|
1.0
|
|
CB
|
E:ASP155
|
3.4
|
48.5
|
1.0
|
|
O
|
E:HOH465
|
3.5
|
49.8
|
1.0
|
|
OD1
|
E:ASP25
|
3.6
|
42.5
|
1.0
|
|
MN
|
E:MN303
|
3.8
|
75.2
|
1.0
|
|
OE1
|
E:GLU27
|
3.8
|
45.5
|
1.0
|
|
CE1
|
E:TYR151
|
3.9
|
38.5
|
1.0
|
|
O
|
E:THR26
|
4.0
|
39.6
|
1.0
|
|
NE2
|
E:GLN42
|
4.0
|
35.3
|
1.0
|
|
OH
|
E:TYR151
|
4.0
|
46.0
|
1.0
|
|
O3P
|
E:5GP301
|
4.0
|
83.0
|
1.0
|
|
CZ
|
E:TYR151
|
4.2
|
49.4
|
1.0
|
|
OD1
|
E:ASP155
|
4.3
|
54.7
|
1.0
|
|
O5'
|
E:5GP301
|
4.5
|
84.6
|
1.0
|
|
CG
|
E:GLU27
|
4.6
|
37.2
|
1.0
|
|
CB
|
E:ASP25
|
4.6
|
44.2
|
1.0
|
|
O
|
E:HOH410
|
4.7
|
49.6
|
1.0
|
|
C5'
|
E:5GP301
|
4.8
|
83.8
|
1.0
|
|
CD1
|
E:TYR151
|
4.8
|
42.8
|
1.0
|
|
O
|
E:HOH431
|
4.9
|
42.1
|
1.0
|
|
C
|
E:THR26
|
4.9
|
37.8
|
1.0
|
|
CA
|
E:ASP155
|
5.0
|
41.2
|
1.0
|
|
Manganese binding site 7 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 7 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mn301
b:88.6
occ:1.00
|
OD2
|
G:ASP155
|
2.1
|
75.6
|
1.0
|
|
OP1
|
R:G604
|
2.1
|
97.1
|
1.0
|
|
OE2
|
G:GLU27
|
2.4
|
54.0
|
1.0
|
|
OD2
|
G:ASP25
|
2.4
|
56.3
|
1.0
|
|
CG
|
G:ASP155
|
3.1
|
53.6
|
1.0
|
|
CD
|
G:GLU27
|
3.3
|
51.6
|
1.0
|
|
P
|
R:G604
|
3.4
|
107.5
|
1.0
|
|
CG
|
G:ASP25
|
3.5
|
48.4
|
1.0
|
|
OE1
|
G:GLU27
|
3.6
|
41.3
|
1.0
|
|
CB
|
G:ASP155
|
3.6
|
37.1
|
1.0
|
|
OP2
|
R:G604
|
3.7
|
100.2
|
1.0
|
|
OH
|
G:TYR151
|
3.8
|
66.5
|
1.0
|
|
CE1
|
G:TYR151
|
3.8
|
57.6
|
1.0
|
|
MN
|
G:MN302
|
3.8
|
81.8
|
1.0
|
|
O
|
G:THR26
|
3.9
|
37.9
|
1.0
|
|
OD1
|
G:ASP25
|
4.0
|
58.8
|
1.0
|
|
NE2
|
G:GLN42
|
4.0
|
41.6
|
1.0
|
|
CZ
|
G:TYR151
|
4.1
|
58.9
|
1.0
|
|
OD1
|
G:ASP155
|
4.2
|
63.4
|
1.0
|
|
O3'
|
R:G603
|
4.3
|
115.8
|
1.0
|
|
O5'
|
R:G604
|
4.4
|
102.9
|
1.0
|
|
CG
|
G:GLU27
|
4.7
|
42.5
|
1.0
|
|
O
|
G:HOH415
|
4.7
|
45.1
|
1.0
|
|
O
|
G:HOH462
|
4.7
|
51.5
|
1.0
|
|
C5'
|
R:G604
|
4.7
|
88.3
|
1.0
|
|
CB
|
G:ASP25
|
4.8
|
48.5
|
1.0
|
|
CD1
|
G:TYR151
|
4.8
|
52.5
|
1.0
|
|
C
|
G:THR26
|
4.9
|
35.7
|
1.0
|
|
Manganese binding site 8 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 8 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mn302
b:81.8
occ:1.00
|
OD1
|
G:ASP25
|
2.2
|
58.8
|
1.0
|
|
O
|
G:HOH415
|
2.5
|
45.1
|
1.0
|
|
O
|
G:HOH426
|
2.8
|
51.5
|
1.0
|
|
OP1
|
R:G604
|
2.9
|
97.1
|
1.0
|
|
O3'
|
R:G603
|
3.0
|
115.8
|
1.0
|
|
CG
|
G:ASP25
|
3.0
|
48.4
|
1.0
|
|
OD2
|
G:ASP25
|
3.3
|
56.3
|
1.0
|
|
P
|
R:G604
|
3.6
|
107.5
|
1.0
|
|
OD2
|
G:ASP84
|
3.7
|
55.1
|
1.0
|
|
OD1
|
G:ASP84
|
3.7
|
45.8
|
1.0
|
|
MN
|
G:MN301
|
3.8
|
88.6
|
1.0
|
|
O
|
G:HOH424
|
4.0
|
30.4
|
1.0
|
|
CG
|
G:ASP84
|
4.1
|
45.5
|
1.0
|
|
O
|
G:THR26
|
4.1
|
37.9
|
1.0
|
|
C3'
|
R:G603
|
4.1
|
109.1
|
1.0
|
|
O
|
G:HIS79
|
4.2
|
42.7
|
1.0
|
|
C4'
|
R:G603
|
4.2
|
96.0
|
1.0
|
|
O2'
|
R:G603
|
4.3
|
105.8
|
1.0
|
|
CB
|
G:ASP25
|
4.4
|
48.5
|
1.0
|
|
O
|
G:HOH404
|
4.4
|
43.7
|
1.0
|
|
N
|
G:THR26
|
4.5
|
32.0
|
1.0
|
|
O5'
|
R:G604
|
4.5
|
102.9
|
1.0
|
|
C5'
|
R:G604
|
4.6
|
88.3
|
1.0
|
|
O
|
G:HOH462
|
4.6
|
51.5
|
1.0
|
|
OP2
|
R:G604
|
4.7
|
100.2
|
1.0
|
|
C5'
|
R:G603
|
4.8
|
83.2
|
1.0
|
|
CA
|
G:ASP25
|
4.8
|
31.3
|
1.0
|
|
OD2
|
G:ASP155
|
4.9
|
75.6
|
1.0
|
|
C2'
|
R:G603
|
4.9
|
110.1
|
1.0
|
|
Manganese binding site 9 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 9 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mn304
b:97.0
occ:1.00
|
OD2
|
I:ASP155
|
2.1
|
93.3
|
1.0
|
|
OD2
|
I:ASP25
|
2.3
|
54.9
|
1.0
|
|
O2P
|
I:5GP301
|
2.5
|
87.2
|
1.0
|
|
OE2
|
I:GLU27
|
2.5
|
46.1
|
1.0
|
|
CG
|
I:ASP155
|
3.0
|
79.3
|
1.0
|
|
O3P
|
I:5GP301
|
3.3
|
66.7
|
1.0
|
|
P
|
I:5GP301
|
3.3
|
82.7
|
1.0
|
|
CB
|
I:ASP155
|
3.4
|
57.1
|
1.0
|
|
CG
|
I:ASP25
|
3.4
|
50.3
|
1.0
|
|
O
|
I:HOH468
|
3.5
|
58.2
|
1.0
|
|
CD
|
I:GLU27
|
3.6
|
48.1
|
1.0
|
|
MN
|
I:MN305
|
3.8
|
90.3
|
1.0
|
|
OH
|
I:TYR151
|
3.9
|
53.0
|
1.0
|
|
OE1
|
I:GLU27
|
3.9
|
47.7
|
1.0
|
|
OD1
|
I:ASP25
|
3.9
|
56.8
|
1.0
|
|
NE2
|
I:GLN42
|
4.0
|
31.1
|
1.0
|
|
O
|
I:THR26
|
4.0
|
37.8
|
1.0
|
|
O1P
|
I:5GP301
|
4.1
|
85.1
|
1.0
|
|
CE1
|
I:TYR151
|
4.1
|
52.5
|
1.0
|
|
OD1
|
I:ASP155
|
4.1
|
88.2
|
1.0
|
|
CZ
|
I:TYR151
|
4.2
|
61.6
|
1.0
|
|
O
|
I:HOH416
|
4.6
|
44.9
|
1.0
|
|
CB
|
I:ASP25
|
4.6
|
46.6
|
1.0
|
|
O5'
|
I:5GP301
|
4.6
|
88.3
|
1.0
|
|
CG
|
I:GLU27
|
4.8
|
44.5
|
1.0
|
|
O
|
I:HOH430
|
4.9
|
44.5
|
1.0
|
|
O3'
|
I:5GP302
|
4.9
|
90.8
|
0.8
|
|
CA
|
I:ASP155
|
5.0
|
43.0
|
1.0
|
|
CD1
|
I:TYR151
|
5.0
|
49.0
|
1.0
|
|
Manganese binding site 10 out
of 16 in 7mpq
Go back to
Manganese Binding Sites List in 7mpq
Manganese binding site 10 out
of 16 in the Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 10 of Bartonella Henselae Nrnc Cleaving Pgg in the Presence of MN2+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mn305
b:90.3
occ:1.00
|
O
|
I:HOH403
|
2.1
|
69.6
|
1.0
|
|
OD1
|
I:ASP25
|
2.3
|
56.8
|
1.0
|
|
O
|
I:HOH468
|
2.4
|
58.2
|
1.0
|
|
O2P
|
I:5GP301
|
2.5
|
87.2
|
1.0
|
|
O3'
|
I:5GP302
|
3.0
|
90.8
|
0.8
|
|
CG
|
I:ASP25
|
3.2
|
50.3
|
1.0
|
|
OD2
|
I:ASP25
|
3.4
|
54.9
|
1.0
|
|
OD2
|
I:ASP84
|
3.5
|
67.1
|
1.0
|
|
OD1
|
I:ASP84
|
3.6
|
64.5
|
1.0
|
|
O2'
|
I:5GP302
|
3.7
|
85.9
|
0.8
|
|
MN
|
I:MN304
|
3.8
|
97.0
|
1.0
|
|
P
|
I:5GP301
|
3.9
|
82.7
|
1.0
|
|
O
|
I:HOH419
|
4.0
|
37.6
|
1.0
|
|
CG
|
I:ASP84
|
4.0
|
57.3
|
1.0
|
|
O
|
I:THR26
|
4.0
|
37.8
|
1.0
|
|
C3'
|
I:5GP302
|
4.2
|
93.3
|
0.8
|
|
C5'
|
I:5GP301
|
4.3
|
82.3
|
1.0
|
|
O
|
I:HIS79
|
4.3
|
41.3
|
1.0
|
|
O
|
I:HOH430
|
4.3
|
44.5
|
1.0
|
|
O5'
|
I:5GP301
|
4.4
|
88.3
|
1.0
|
|
O1P
|
I:5GP301
|
4.4
|
85.1
|
1.0
|
|
N
|
I:THR26
|
4.5
|
37.0
|
1.0
|
|
O
|
I:HOH416
|
4.5
|
44.9
|
1.0
|
|
C2'
|
I:5GP302
|
4.5
|
94.4
|
0.8
|
|
CB
|
I:ASP25
|
4.6
|
46.6
|
1.0
|
|
C4'
|
I:5GP302
|
4.8
|
93.7
|
0.8
|
|
OD2
|
I:ASP155
|
4.8
|
93.3
|
1.0
|
|
CA
|
I:ASP25
|
5.0
|
30.9
|
1.0
|
|
Reference:
J.D.Lormand,
H.Sondermann.
Structural Characterization of Nrnc Identifies Unifying Features of Dinucleotidases To Be Published.
Page generated: Sun Oct 6 10:09:21 2024
|
