Manganese in PDB 7mga: Concanavalin A Bound to A Dna Glycoconjugate, Man-Aaattt

The structure of Concanavalin A Bound to A Dna Glycoconjugate, Man-Aaattt, PDB code: 7mga was solved by B.E.Partridge, P.H.Winegar, C.A.Mirkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.90 / 2.00
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	65.09, 77.78, 126.06, 90, 90, 90
R / Rfree (%)	19.6 / 22.9

The structure of Concanavalin A Bound to A Dna Glycoconjugate, Man-Aaattt also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Manganese atom in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Aaattt (pdb code 7mga). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Aaattt, PDB code: 7mga:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Aaattt


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Concanavalin A Bound to A Dna Glycoconjugate, Man-Aaattt within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:25.3 occ:1.00 OD2 A:ASP10 2.0 18.6 1.0 OE2 A:GLU8 2.1 24.7 1.0 OD1 A:ASP19 2.1 25.2 1.0 NE2 A:HIS24 2.2 18.6 1.0 O A:HOH486 2.2 18.3 1.0 O A:HOH420 2.2 18.7 1.0 CG A:ASP19 3.0 25.4 1.0 CG A:ASP10 3.1 20.9 1.0 CD A:GLU8 3.1 20.9 1.0 CE1 A:HIS24 3.2 18.1 1.0 CD2 A:HIS24 3.2 19.0 1.0 CB A:ASP10 3.5 22.4 1.0 OD2 A:ASP19 3.5 20.0 1.0 OE1 A:GLU8 3.5 22.6 1.0 O A:HOH496 3.9 23.5 1.0 CA A:CA302 4.1 19.3 1.0 OG A:SER34 4.1 25.3 1.0 OD1 A:ASP10 4.2 21.6 1.0 CB A:ASP19 4.2 26.6 1.0 ND1 A:HIS24 4.3 18.5 1.0 CG A:HIS24 4.4 17.9 1.0 O A:HOH527 4.4 35.6 1.0 CG A:GLU8 4.4 23.2 1.0 CA A:ASP19 4.6 29.2 1.0 O A:VAL32 4.6 23.4 1.0

Manganese binding site 2 out of 2 in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Aaattt


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Concanavalin A Bound to A Dna Glycoconjugate, Man-Aaattt within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn301 b:27.8 occ:1.00 OD2 B:ASP10 2.0 20.5 1.0 O B:HOH429 2.0 20.8 1.0 OE2 B:GLU8 2.0 26.3 1.0 O B:HOH447 2.1 19.4 1.0 OD1 B:ASP19 2.1 24.6 1.0 NE2 B:HIS24 2.1 18.6 1.0 CG B:ASP19 3.0 27.9 1.0 CG B:ASP10 3.0 23.2 1.0 CE1 B:HIS24 3.1 19.2 1.0 CD B:GLU8 3.1 23.9 1.0 CD2 B:HIS24 3.2 19.0 1.0 CB B:ASP10 3.4 25.7 1.0 OD2 B:ASP19 3.5 22.6 1.0 OE1 B:GLU8 3.6 22.2 1.0 O B:HOH460 4.0 24.1 1.0 CA B:CA302 4.1 22.3 1.0 OD1 B:ASP10 4.1 25.5 1.0 OG B:SER34 4.1 26.2 1.0 CB B:ASP19 4.2 28.0 1.0 ND1 B:HIS24 4.2 20.5 1.0 CG B:HIS24 4.3 19.5 1.0 CG B:GLU8 4.4 24.8 1.0 CA B:ASP19 4.5 30.8 1.0 O B:VAL32 4.7 22.1 1.0 CA B:ASP10 5.0 24.7 1.0

B.E.Partridge, P.H.Winegar, Z.Han, C.A.Mirkin. Redefining Protein Interfaces Within Protein Single Crystals with Dna Journal of the American 2021CHEMICAL Society.
DOI: 10.1021/JACS.1C04191