Manganese in PDB 7mg8: Concanavalin A Bound to A Dna Glycoconjugate, Man-Cgcg

The structure of Concanavalin A Bound to A Dna Glycoconjugate, Man-Cgcg, PDB code: 7mg8 was solved by B.E.Partridge, P.H.Winegar, C.A.Mirkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.92 / 3.00
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	66.419, 69.92, 125.869, 90, 90, 90
R / Rfree (%)	23.3 / 28.4

The structure of Concanavalin A Bound to A Dna Glycoconjugate, Man-Cgcg also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Manganese atom in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Cgcg (pdb code 7mg8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Cgcg, PDB code: 7mg8:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Cgcg


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Concanavalin A Bound to A Dna Glycoconjugate, Man-Cgcg within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:72.8 occ:1.00 OE2 A:GLU8 1.9 65.5 1.0 OD1 A:ASP19 2.0 92.1 1.0 OD2 A:ASP10 2.0 59.4 1.0 NE2 A:HIS24 2.1 48.6 1.0 CG A:ASP19 2.9 77.5 1.0 CD A:GLU8 2.9 60.1 1.0 CG A:ASP10 3.0 50.9 1.0 CE1 A:HIS24 3.1 42.9 1.0 CD2 A:HIS24 3.2 46.5 1.0 CB A:ASP10 3.3 48.4 1.0 OD2 A:ASP19 3.3 82.3 1.0 OE1 A:GLU8 3.4 60.6 1.0 CB A:ASP19 4.0 66.7 1.0 CG A:GLU8 4.1 54.5 1.0 OG A:SER34 4.2 62.9 1.0 CA A:CA302 4.2 60.8 1.0 OD1 A:ASP10 4.2 58.6 1.0 ND1 A:HIS24 4.2 42.9 1.0 CG A:HIS24 4.3 44.8 1.0 CA A:ASP19 4.6 63.9 1.0 O A:VAL32 4.6 65.5 1.0 CA A:ASP10 4.8 51.4 1.0

Manganese binding site 2 out of 2 in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Cgcg


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Concanavalin A Bound to A Dna Glycoconjugate, Man-Cgcg within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn301 b:59.1 occ:1.00 OE2 B:GLU8 1.9 73.8 1.0 OD1 B:ASP19 2.0 77.3 1.0 OD2 B:ASP10 2.0 65.1 1.0 NE2 B:HIS24 2.1 56.0 1.0 CG B:ASP19 2.7 74.1 1.0 CD B:GLU8 3.0 61.9 1.0 CE1 B:HIS24 3.0 56.7 1.0 CG B:ASP10 3.0 64.3 1.0 CD2 B:HIS24 3.1 59.9 1.0 OD2 B:ASP19 3.2 78.0 1.0 CB B:ASP10 3.3 55.9 1.0 OE1 B:GLU8 3.5 58.5 1.0 CB B:ASP19 3.9 69.8 1.0 CG B:GLU8 4.1 54.9 1.0 CA B:CA302 4.1 69.4 1.0 ND1 B:HIS24 4.1 55.3 1.0 OD1 B:ASP10 4.2 69.6 1.0 CG B:HIS24 4.2 56.0 1.0 OG B:SER34 4.2 53.3 1.0 CA B:ASP19 4.4 70.1 1.0 O B:VAL32 4.6 79.2 1.0 CA B:ASP10 4.8 52.8 1.0

B.E.Partridge, P.H.Winegar, Z.Han, C.A.Mirkin. Redefining Protein Interfaces Within Protein Single Crystals with Dna Journal of the American 2021CHEMICAL Society.
DOI: 10.1021/JACS.1C04191