Manganese in PDB 7mg6: Concanavalin A Bound to A Dna Glycoconjugate, Man-Agct

Protein crystallography data

The structure of Concanavalin A Bound to A Dna Glycoconjugate, Man-Agct, PDB code: 7mg6 was solved by B.E.Partridge, P.H.Winegar, C.A.Mirkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.89 / 1.70
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 65.729, 70.89, 125.839, 90, 90, 90
R / Rfree (%) 17.7 / 20.7

Other elements in 7mg6:

The structure of Concanavalin A Bound to A Dna Glycoconjugate, Man-Agct also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Agct (pdb code 7mg6). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Agct, PDB code: 7mg6:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 7mg6

Go back to Manganese Binding Sites List in 7mg6
Manganese binding site 1 out of 2 in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Agct


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Concanavalin A Bound to A Dna Glycoconjugate, Man-Agct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:20.8
occ:1.00
OE2 A:GLU8 2.1 18.6 1.0
OD1 A:ASP19 2.1 20.6 1.0
NE2 A:HIS24 2.2 22.4 1.0
OD2 A:ASP10 2.2 18.8 1.0
O A:HOH440 2.2 22.4 1.0
O A:HOH428 2.3 22.1 1.0
CG A:ASP19 3.1 21.6 1.0
CD A:GLU8 3.1 20.2 1.0
CE1 A:HIS24 3.1 21.7 1.0
CG A:ASP10 3.2 16.4 1.0
CD2 A:HIS24 3.2 19.9 1.0
OE1 A:GLU8 3.5 19.4 1.0
OD2 A:ASP19 3.6 21.9 1.0
CB A:ASP10 3.6 18.5 1.0
O A:HOH498 3.9 19.5 1.0
O A:HOH485 4.1 33.4 1.0
CA A:CA302 4.1 21.0 1.0
OG A:SER34 4.2 20.5 1.0
CB A:ASP19 4.3 23.3 1.0
ND1 A:HIS24 4.3 22.4 1.0
OD1 A:ASP10 4.3 19.8 1.0
CG A:HIS24 4.4 19.8 1.0
CG A:GLU8 4.5 19.6 1.0
O A:VAL32 4.6 22.9 1.0
CA A:ASP19 4.7 23.6 1.0

Manganese binding site 2 out of 2 in 7mg6

Go back to Manganese Binding Sites List in 7mg6
Manganese binding site 2 out of 2 in the Concanavalin A Bound to A Dna Glycoconjugate, Man-Agct


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Concanavalin A Bound to A Dna Glycoconjugate, Man-Agct within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn301

b:22.8
occ:1.00
OD2 B:ASP10 2.1 20.4 1.0
O B:HOH467 2.1 25.8 1.0
OE2 B:GLU8 2.1 18.8 1.0
OD1 B:ASP19 2.1 20.8 1.0
NE2 B:HIS24 2.2 23.2 1.0
O B:HOH425 2.3 22.6 1.0
CG B:ASP10 3.1 16.6 1.0
CG B:ASP19 3.1 24.3 1.0
CE1 B:HIS24 3.1 23.7 1.0
CD B:GLU8 3.2 21.7 1.0
CD2 B:HIS24 3.2 23.2 1.0
CB B:ASP10 3.5 18.6 1.0
OE1 B:GLU8 3.5 21.3 1.0
OD2 B:ASP19 3.5 23.7 1.0
O B:HOH494 3.9 22.2 1.0
CA B:CA302 4.1 22.1 1.0
OD1 B:ASP10 4.1 21.4 1.0
OG B:SER34 4.2 23.3 1.0
CB B:ASP19 4.2 24.6 1.0
O B:HOH438 4.3 40.1 1.0
ND1 B:HIS24 4.3 24.2 1.0
CG B:HIS24 4.4 23.0 1.0
O B:HOH549 4.4 31.8 1.0
CG B:GLU8 4.5 19.9 1.0
O B:VAL32 4.6 21.1 1.0
CA B:ASP19 4.6 27.2 1.0

Reference:

B.E.Partridge, P.H.Winegar, Z.Han, C.A.Mirkin. Redefining Protein Interfaces Within Protein Single Crystals with Dna J.Am.Chem.Soc. 2021.
ISSN: ESSN 1520-5126
DOI: 10.1021/JACS.1C04191
Page generated: Mon Jul 12 15:28:23 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy