Atomistry » Manganese » PDB 7lt2-7mxr » 7mg2
Atomistry »
  Manganese »
    PDB 7lt2-7mxr »
      7mg2 »

Manganese in PDB 7mg2: Concanavalin A Crystallized in the Presence of Man-8

Protein crystallography data

The structure of Concanavalin A Crystallized in the Presence of Man-8, PDB code: 7mg2 was solved by B.E.Partridge, P.H.Winegar, C.A.Mirkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.06 / 1.80
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.42, 86.13, 89.5, 90, 90, 90
R / Rfree (%) 18.4 / 23

Other elements in 7mg2:

The structure of Concanavalin A Crystallized in the Presence of Man-8 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Concanavalin A Crystallized in the Presence of Man-8 (pdb code 7mg2). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Concanavalin A Crystallized in the Presence of Man-8, PDB code: 7mg2:

Manganese binding site 1 out of 1 in 7mg2

Go back to Manganese Binding Sites List in 7mg2
Manganese binding site 1 out of 1 in the Concanavalin A Crystallized in the Presence of Man-8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Concanavalin A Crystallized in the Presence of Man-8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:12.9
occ:1.00
OD2 A:ASP10 2.0 9.1 1.0
OD1 A:ASP19 2.2 12.2 1.0
O A:HOH432 2.2 10.8 1.0
NE2 A:HIS24 2.2 11.5 1.0
OE2 A:GLU8 2.2 14.3 1.0
O A:HOH485 2.3 13.6 1.0
CG A:ASP19 3.1 13.9 1.0
CG A:ASP10 3.1 10.1 1.0
CE1 A:HIS24 3.2 12.2 1.0
CD2 A:HIS24 3.2 12.6 1.0
CD A:GLU8 3.3 14.8 1.0
OD2 A:ASP19 3.5 13.2 1.0
CB A:ASP10 3.6 10.3 1.0
OE1 A:GLU8 3.7 14.7 1.0
O A:HOH446 4.1 11.2 1.0
OG A:SER34 4.1 15.1 1.0
CA A:CA302 4.2 11.6 1.0
OD1 A:ASP10 4.2 9.5 1.0
CB A:ASP19 4.2 13.1 1.0
O A:HOH555 4.3 23.4 1.0
ND1 A:HIS24 4.3 11.8 1.0
CG A:HIS24 4.3 12.4 1.0
CG A:GLU8 4.6 13.7 1.0
CA A:ASP19 4.6 14.5 1.0
O A:VAL32 4.6 16.2 1.0

Reference:

B.E.Partridge, P.H.Winegar, Z.Han, C.A.Mirkin. Redefining Protein Interfaces Within Protein Single Crystals with Dna J.Am.Chem.Soc. 2021.
ISSN: ESSN 1520-5126
DOI: 10.1021/JACS.1C04191
Page generated: Sun Oct 6 10:05:04 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy