Manganese in PDB 7mg1: Concanavalin A Crystallized Without Dna Glycoconjugate

The structure of Concanavalin A Crystallized Without Dna Glycoconjugate, PDB code: 7mg1 was solved by B.E.Partridge, P.H.Winegar, C.A.Mirkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.62 / 2.00
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.19, 85.18, 89.25, 90, 90, 90
R / Rfree (%)	20.3 / 26.2

The structure of Concanavalin A Crystallized Without Dna Glycoconjugate also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Manganese atom in the Concanavalin A Crystallized Without Dna Glycoconjugate (pdb code 7mg1). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Concanavalin A Crystallized Without Dna Glycoconjugate, PDB code: 7mg1:

Manganese binding site 1 out of 1 in the Concanavalin A Crystallized Without Dna Glycoconjugate


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Concanavalin A Crystallized Without Dna Glycoconjugate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:20.3 occ:1.00 OD2 A:ASP10 2.0 15.4 1.0 OD1 A:ASP19 2.2 21.1 1.0 OE2 A:GLU8 2.2 17.8 1.0 O A:HOH422 2.2 19.6 1.0 NE2 A:HIS24 2.3 20.0 1.0 O A:HOH407 2.3 14.3 1.0 CG A:ASP10 3.1 17.6 1.0 CG A:ASP19 3.1 20.4 1.0 CD A:GLU8 3.2 18.4 1.0 CE1 A:HIS24 3.2 20.1 1.0 CD2 A:HIS24 3.4 20.0 1.0 CB A:ASP10 3.4 17.1 1.0 OE1 A:GLU8 3.5 18.4 1.0 OD2 A:ASP19 3.5 17.8 1.0 OG A:SER34 4.1 19.7 1.0 CA A:CA302 4.1 20.1 1.0 OD1 A:ASP10 4.2 16.6 1.0 CB A:ASP19 4.2 20.8 1.0 ND1 A:HIS24 4.3 19.6 1.0 O A:HOH507 4.4 25.9 1.0 CG A:HIS24 4.5 19.6 1.0 CG A:GLU8 4.5 17.5 1.0 CA A:ASP19 4.5 21.5 1.0 O A:VAL32 4.6 21.0 1.0 CA A:ASP10 5.0 17.3 1.0

B.E.Partridge, P.H.Winegar, Z.Han, C.A.Mirkin. Redefining Protein Interfaces Within Protein Single Crystals with Dna J.Am.Chem.Soc. 2021.
ISSN: ESSN 1520-5126
DOI: 10.1021/JACS.1C04191