Manganese in PDB 7kik: Wheat Dwarf Virus Rep Domain Circular Permutation Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+

The structure of Wheat Dwarf Virus Rep Domain Circular Permutation Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+, PDB code: 7kik was solved by K.J.Tompkins, W.R.Gordon, K.Shi, L.A.Litzau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	66.65 / 1.73
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	94.252, 94.252, 50.107, 90, 90, 90
R / Rfree (%)	15.6 / 18.7

The binding sites of Manganese atom in the Wheat Dwarf Virus Rep Domain Circular Permutation Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+ (pdb code 7kik). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Wheat Dwarf Virus Rep Domain Circular Permutation Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+, PDB code: 7kik:

Manganese binding site 1 out of 1 in the Wheat Dwarf Virus Rep Domain Circular Permutation Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Wheat Dwarf Virus Rep Domain Circular Permutation Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:29.2 occ:1.00 OE1 A:GLU104 2.1 29.9 1.0 O A:HOH378 2.2 26.3 1.0 OP1 C:DA306 2.2 28.2 1.0 NE2 A:HIS114 2.2 25.4 1.0 NE2 A:HIS112 2.3 29.6 1.0 O3' C:DT305 2.8 29.9 1.0 P C:DA306 3.1 30.3 1.0 CD2 A:HIS114 3.1 25.4 1.0 CD A:GLU104 3.3 29.9 1.0 CE1 A:HIS112 3.3 29.4 1.0 CE1 A:HIS114 3.3 28.4 1.0 CD2 A:HIS112 3.3 27.4 1.0 CB A:GLU104 3.7 27.5 1.0 O5' C:DA306 3.8 31.0 1.0 CG A:GLU104 4.0 29.2 1.0 NZ A:LYS25 4.0 24.3 1.0 C3' C:DT305 4.0 29.3 1.0 OE2 A:GLU104 4.2 31.7 1.0 O A:HOH353 4.3 50.1 1.0 CG A:HIS114 4.3 24.9 1.0 OP2 C:DA306 4.4 29.9 1.0 ND1 A:HIS114 4.4 25.5 1.0 ND1 A:HIS112 4.4 27.9 1.0 CG A:HIS112 4.5 27.0 1.0 C2' C:DT305 4.5 27.6 1.0 C4' C:DT305 4.5 31.6 1.0 O C:HOH427 4.6 53.9 1.0 CE A:LYS25 4.8 26.4 1.0

K.Tompkins, K.J.Tompkins, W.R.Gordon, K.Shi, L.A.Litzau. N/A N/A.