Manganese in PDB 7kij: Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site

The structure of Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site, PDB code: 7kij was solved by K.J.Tompkins, W.R.Gordon, K.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.65 / 1.69
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	102.986, 102.986, 138.294, 90, 90, 120
R / Rfree (%)	17.1 / 19.5

The binding sites of Manganese atom in the Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site (pdb code 7kij). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site, PDB code: 7kij:

Manganese binding site 1 out of 1 in the Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn401 b:80.9 occ:1.00 O B:HOH533 3.4 45.8 1.0 O B:HOH505 3.5 35.1 1.0 NE1 A:TRP77 3.5 25.9 1.0 N6 B:DA300 3.6 33.9 1.0 O B:HOH518 3.9 52.8 1.0 O C:HOH367 4.0 45.0 1.0 CD1 A:TRP77 4.4 25.5 1.0 CE2 A:TRP77 4.5 25.1 1.0 O B:HOH510 4.6 43.3 1.0 C6 B:DA300 4.6 33.6 1.0 O4 B:DT299 4.7 49.7 1.0 O C:HOH406 4.7 61.9 1.0 N1 B:DA300 4.8 34.8 1.0 CZ2 A:TRP77 4.8 25.6 1.0 N6 B:DA306 4.9 28.7 1.0

K.Tompkins, K.J.Tompkins, W.R.Gordon, K.Shi. N/A N/A.