Manganese in PDB 7kii: Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+

The structure of Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+, PDB code: 7kii was solved by K.J.Tompkins, W.R.Gordon, K.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.56 / 1.30
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	55.417, 66.343, 71.259, 90, 90, 90
R / Rfree (%)	14.9 / 18.4

The structure of Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+ also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Manganese atom in the Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+ (pdb code 7kii). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+, PDB code: 7kii:

Manganese binding site 1 out of 1 in the Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Muscovy Duck Circovirus Rep Domain Complexed with A Single-Stranded Dna 10-Mer Comprising the Cleavage Site and MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:16.3 occ:1.00 OE1 A:GLU44 2.0 17.5 1.0 NE2 A:HIS52 2.2 15.3 1.0 OE1 A:GLN54 2.2 16.4 1.0 OP1 C:DA306 2.3 16.6 1.0 O A:HOH372 2.4 10.8 1.0 O3' C:DT305 2.5 16.0 1.0 P C:DA306 3.0 16.6 1.0 CE1 A:HIS52 3.1 15.6 1.0 CD2 A:HIS52 3.2 15.2 1.0 CD A:GLN54 3.2 16.0 1.0 CD A:GLU44 3.2 17.4 1.0 CB A:GLU44 3.7 17.1 1.0 C3' C:DT305 3.7 15.9 1.0 CG A:GLN54 3.7 16.3 1.0 O5' C:DA306 3.8 16.7 1.0 NZ A:LYS94 4.0 16.9 1.0 CG A:GLU44 4.0 16.7 1.0 CB A:GLN54 4.1 15.1 1.0 C4' C:DT305 4.2 15.7 1.0 OE2 A:GLU44 4.2 17.9 1.0 C2' C:DT305 4.2 16.3 1.0 OP2 C:DA306 4.2 17.5 1.0 ND1 A:HIS52 4.3 15.4 1.0 O C:HOH438 4.3 30.6 1.0 CG A:HIS52 4.3 15.3 1.0 NE2 A:GLN54 4.4 16.6 1.0 OE1 A:GLU95 4.4 25.4 1.0 CE A:LYS94 4.7 17.6 1.0

K.Tompkins, K.J.Tompkins, W.R.Gordon, K.Shi. N/A N/A.