Atomistry » Manganese » PDB 7d7z-7eww » 7etb
Atomistry »
  Manganese »
    PDB 7d7z-7eww »
      7etb »

Manganese in PDB 7etb: Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii

Enzymatic activity of Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii

All present enzymatic activity of Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii:
4.1.2.52;

Protein crystallography data

The structure of Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii, PDB code: 7etb was solved by P.Watthaisong, A.Binlaeh, A.Jaruwat, P.Chaiyen, P.Chitnumsub, S.Maenpuen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.45 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 147.724, 90.345, 86.6, 90, 122.26, 90
R / Rfree (%) 14.6 / 17.7

Other elements in 7etb:

The structure of Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii (pdb code 7etb). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii, PDB code: 7etb:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 7etb

Go back to Manganese Binding Sites List in 7etb
Manganese binding site 1 out of 3 in the Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn302

b:13.8
occ:1.00
 O3 A:PYR301 2.1 14.5 1.0
OE2 A:GLU151 2.1 11.3 1.0
O A:HOH438 2.2 11.5 1.0
OD2 A:ASP177 2.2 12.9 1.0
O2 A:PYR301 2.2 12.1 1.0
O C:HOH459 2.2 14.0 1.0
C2 A:PYR301 2.8 13.5 1.0
C1 A:PYR301 2.9 14.2 1.0
CD A:GLU151 3.1 12.1 1.0
CG A:ASP177 3.2 12.9 1.0
OE1 A:GLU151 3.5 11.6 1.0
CB A:ASP177 3.6 12.9 1.0
NE2 A:GLN149 3.8 13.7 1.0
O A:HOH436 3.9 11.6 1.0
NH1 A:ARG72 4.0 11.7 1.0
O1 A:PYR301 4.2 13.0 1.0
O C:VAL120 4.2 16.2 1.0
C3 A:PYR301 4.3 10.9 1.0
OD1 A:ASP177 4.3 12.3 1.0
O A:HOH554 4.4 27.7 1.0
N A:ASP177 4.4 13.2 1.0
CG A:GLU151 4.5 11.0 1.0
OE1 A:GLU46 4.5 11.7 1.0
CA A:GLY174 4.5 13.5 1.0
CA A:ASP177 4.6 13.2 1.0
CD A:GLN149 4.8 13.8 1.0
CB A:GLU151 4.8 12.1 1.0
CZ A:ARG72 4.9 11.8 1.0
NE2 A:HIS47 5.0 11.3 1.0

Manganese binding site 2 out of 3 in 7etb

Go back to Manganese Binding Sites List in 7etb
Manganese binding site 2 out of 3 in the Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn301

b:13.1
occ:1.00
 O3 B:PYR300 2.1 13.8 1.0
OE2 B:GLU151 2.1 11.4 1.0
O B:HOH447 2.2 12.6 1.0
OD2 B:ASP177 2.2 12.9 1.0
O A:HOH507 2.2 13.3 1.0
O1 B:PYR300 2.2 12.7 1.0
C2 B:PYR300 2.8 14.3 1.0
C1 B:PYR300 2.9 15.2 1.0
CD B:GLU151 3.2 12.6 1.0
CG B:ASP177 3.2 12.4 1.0
OE1 B:GLU151 3.5 13.0 1.0
CB B:ASP177 3.6 12.7 1.0
NE2 B:GLN149 3.8 13.3 1.0
O B:HOH459 3.9 12.2 1.0
NH1 B:ARG72 4.0 11.7 1.0
O2 B:PYR300 4.2 14.2 1.0
O A:VAL120 4.3 14.8 1.0
C3 B:PYR300 4.3 11.5 1.0
OD1 B:ASP177 4.3 12.6 1.0
O B:HOH569 4.4 25.5 1.0
N B:ASP177 4.4 12.5 1.0
CG B:GLU151 4.5 12.1 1.0
OE1 B:GLU46 4.5 13.9 1.0
CA B:GLY174 4.5 13.8 1.0
CA B:ASP177 4.6 13.1 1.0
CD B:GLN149 4.8 13.9 1.0
CB B:GLU151 4.8 12.1 1.0
CZ B:ARG72 4.9 12.3 1.0
NE2 B:HIS47 5.0 12.5 1.0

Manganese binding site 3 out of 3 in 7etb

Go back to Manganese Binding Sites List in 7etb
Manganese binding site 3 out of 3 in the Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Abhpai-Mn-Pyruvate Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn301

b:13.4
occ:1.00
 O3 C:PYR300 2.1 13.7 1.0
O C:HOH434 2.1 11.8 1.0
OE2 C:GLU151 2.1 12.5 1.0
O2 C:PYR300 2.2 12.3 1.0
O B:HOH472 2.2 14.2 1.0
OD2 C:ASP177 2.2 12.1 1.0
C2 C:PYR300 2.9 13.8 1.0
C1 C:PYR300 2.9 14.7 1.0
CD C:GLU151 3.1 13.5 1.0
CG C:ASP177 3.2 11.4 1.0
OE1 C:GLU151 3.5 12.8 1.0
CB C:ASP177 3.6 11.6 1.0
NE2 C:GLN149 3.8 12.8 1.0
O C:HOH452 3.8 10.5 1.0
NH1 C:ARG72 4.0 14.2 1.0
O1 C:PYR300 4.2 13.8 1.0
O B:VAL120 4.2 14.3 1.0
C3 C:PYR300 4.3 12.0 1.0
OD1 C:ASP177 4.4 11.2 1.0
O C:HOH569 4.4 26.2 1.0
N C:ASP177 4.4 12.3 1.0
CG C:GLU151 4.5 11.7 1.0
OE1 C:GLU46 4.5 12.9 1.0
CA C:GLY174 4.5 14.7 1.0
CA C:ASP177 4.6 12.0 1.0
CD C:GLN149 4.7 13.2 1.0
CB C:GLU151 4.8 12.1 1.0
CZ C:ARG72 4.9 13.7 1.0
NE2 C:HIS47 5.0 12.1 1.0
OE1 C:GLN149 5.0 15.1 1.0

Reference:

P.Watthaisong, A.Binlaeh, A.Jaruwat, N.Lawan, J.Tantipisit, J.Jaroensuk, L.Chuaboon, J.Phonbuppha, R.Tinikul, P.Chaiyen, P.Chitnumsub, S.Maenpuen. Catalytic and Structural Insights Into A Stereospecific and Thermostable Class II Aldolase Hpai From Acinetobacter Baumannii. J.Biol.Chem. 01280 2021.
ISSN: ESSN 1083-351X
PubMed: 34624314
DOI: 10.1016/J.JBC.2021.101280
Page generated: Sun Oct 6 08:32:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy