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Manganese in PDB 7esz: Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cina and Cinb with MN2+ From Wpip

Protein crystallography data

The structure of Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cina and Cinb with MN2+ From Wpip, PDB code: 7esz was solved by Y.J.Xiao, W.Wang, X.Chen, X.Y.Ji, H.T.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.07 / 2.48
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 85.466, 86.38, 93.018, 110.06, 91.86, 115.38
R / Rfree (%) 19.8 / 25

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cina and Cinb with MN2+ From Wpip (pdb code 7esz). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cina and Cinb with MN2+ From Wpip, PDB code: 7esz:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 7esz

Go back to Manganese Binding Sites List in 7esz
Manganese binding site 1 out of 2 in the Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cina and Cinb with MN2+ From Wpip


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cina and Cinb with MN2+ From Wpip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn801

b:67.5
occ:1.00
O A:HOH904 1.9 41.9 1.0
OE2 A:GLU277 2.1 52.5 1.0
O A:LEU278 2.2 38.1 1.0
OE1 A:GLU223 2.2 58.0 1.0
OD2 A:ASP257 2.2 56.5 1.0
O A:HOH912 2.4 38.4 1.0
CG A:ASP257 3.1 45.7 1.0
CD A:GLU277 3.2 54.6 1.0
CD A:GLU223 3.3 55.2 1.0
OD1 A:ASP257 3.3 47.4 1.0
C A:LEU278 3.3 30.0 1.0
OE2 A:GLU223 3.7 58.9 1.0
N A:LEU278 3.8 29.0 1.0
OE1 A:GLU277 3.8 61.1 1.0
CA A:LEU278 4.0 32.2 1.0
CG A:GLU277 4.3 41.6 1.0
N A:LYS279 4.3 29.7 1.0
CB A:LEU278 4.4 32.2 1.0
NZ A:LYS279 4.4 58.1 1.0
CG A:GLU223 4.5 46.2 1.0
CG A:LYS279 4.5 34.8 1.0
CE1 A:HIS227 4.5 39.5 1.0
CB A:ASP257 4.5 29.0 1.0
CA A:LYS279 4.6 30.0 1.0
C A:GLU277 4.7 28.8 1.0
NE2 A:HIS227 4.7 41.1 1.0

Manganese binding site 2 out of 2 in 7esz

Go back to Manganese Binding Sites List in 7esz
Manganese binding site 2 out of 2 in the Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cina and Cinb with MN2+ From Wpip


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cina and Cinb with MN2+ From Wpip within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn801

b:34.5
occ:1.00
OE1 C:GLU277 1.8 57.6 1.0
O C:HOH901 2.1 43.2 1.0
O C:LEU278 2.2 31.5 1.0
OD2 C:ASP257 2.3 54.0 1.0
OE1 C:GLU223 2.4 61.8 1.0
CD C:GLU277 2.9 54.6 1.0
CG C:ASP257 3.2 43.9 1.0
O C:HOH917 3.3 41.4 1.0
OD1 C:ASP257 3.4 47.1 1.0
C C:LEU278 3.4 36.4 1.0
CD C:GLU223 3.5 58.9 1.0
OE2 C:GLU277 3.5 59.3 1.0
N C:LEU278 3.8 30.6 1.0
OE2 C:GLU223 4.0 66.4 1.0
CG C:GLU277 4.1 41.5 1.0
NZ C:LYS279 4.1 48.6 1.0
CA C:LEU278 4.1 37.6 1.0
CG C:LYS279 4.3 36.8 1.0
N C:LYS279 4.4 37.4 1.0
C C:GLU277 4.6 44.9 1.0
CE1 C:HIS227 4.6 44.6 1.0
CB C:ASP257 4.6 39.6 1.0
CB C:LEU278 4.7 38.3 1.0
CA C:LYS279 4.7 32.2 1.0
CG C:GLU223 4.7 46.4 1.0
NE2 C:HIS227 4.8 44.0 1.0
CA C:GLU277 4.9 31.4 1.0

Reference:

Y.Xiao, H.Chen, H.Wang, M.Zhang, X.Chen, J.M.Berk, L.Zhang, Y.Wei, W.Li, W.Cui, F.Wang, Q.Wang, C.Cui, T.Li, C.Chen, S.Ye, L.Zhang, X.Ji, J.Huang, W.Wang, Z.Wang, M.Hochstrasser, H.Yang. Structural and Mechanistic Insights Into the Complexes Formed By Wolbachia Cytoplasmic Incompatibility Factors. Proc.Natl.Acad.Sci.Usa V. 118 2021.
ISSN: ESSN 1091-6490
PubMed: 34620712
DOI: 10.1073/PNAS.2107699118
Page generated: Sun Oct 6 08:32:09 2024

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