Manganese in PDB 7eda: Structure of Monomeric Photosystem II
Enzymatic activity of Structure of Monomeric Photosystem II
All present enzymatic activity of Structure of Monomeric Photosystem II:
1.10.3.9;
Other elements in 7eda:
The structure of Structure of Monomeric Photosystem II also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the Structure of Monomeric Photosystem II
(pdb code 7eda). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the
Structure of Monomeric Photosystem II, PDB code: 7eda:
Jump to Manganese binding site number:
1;
2;
3;
4;
Manganese binding site 1 out
of 4 in 7eda
Go back to
Manganese Binding Sites List in 7eda
Manganese binding site 1 out
of 4 in the Structure of Monomeric Photosystem II
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Structure of Monomeric Photosystem II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:22.3
occ:1.00
|
MN1
|
A:OEX401
|
0.0
|
22.3
|
1.0
|
OE2
|
A:GLU189
|
1.5
|
13.5
|
1.0
|
O3
|
A:OEX401
|
1.8
|
23.1
|
1.0
|
O1
|
A:OEX401
|
1.9
|
21.8
|
1.0
|
OD2
|
A:ASP342
|
2.4
|
25.1
|
1.0
|
NE2
|
A:HIS332
|
2.4
|
16.5
|
1.0
|
O5
|
A:OEX401
|
2.6
|
23.5
|
1.0
|
CD
|
A:GLU189
|
2.8
|
13.5
|
1.0
|
MN2
|
A:OEX401
|
2.9
|
23.1
|
1.0
|
CD2
|
A:HIS332
|
3.0
|
16.5
|
1.0
|
CG
|
A:ASP342
|
3.2
|
25.1
|
1.0
|
MN3
|
A:OEX401
|
3.3
|
23.4
|
1.0
|
OD1
|
A:ASP342
|
3.3
|
25.1
|
1.0
|
CA1
|
A:OEX401
|
3.5
|
25.2
|
1.0
|
CG
|
A:GLU189
|
3.6
|
13.5
|
1.0
|
CE1
|
A:HIS332
|
3.6
|
16.5
|
1.0
|
OE1
|
A:GLU189
|
3.7
|
13.5
|
1.0
|
O2
|
A:OEX401
|
3.8
|
25.9
|
1.0
|
NE2
|
A:HIS337
|
4.0
|
21.5
|
1.0
|
CG
|
A:HIS332
|
4.3
|
16.5
|
1.0
|
OE1
|
A:GLU333
|
4.3
|
23.0
|
1.0
|
OXT
|
A:ALA344
|
4.5
|
25.2
|
1.0
|
ND1
|
A:HIS332
|
4.5
|
16.5
|
1.0
|
CE1
|
A:HIS337
|
4.5
|
21.5
|
1.0
|
CG1
|
A:VAL185
|
4.6
|
9.8
|
1.0
|
CB
|
A:ASP342
|
4.6
|
25.1
|
1.0
|
OE2
|
A:GLU333
|
4.8
|
23.0
|
1.0
|
CB
|
A:GLU189
|
4.8
|
13.5
|
1.0
|
CD
|
A:GLU333
|
4.9
|
23.0
|
1.0
|
OE1
|
C:GLU354
|
4.9
|
23.8
|
1.0
|
OE2
|
C:GLU354
|
5.0
|
23.8
|
1.0
|
MN4
|
A:OEX401
|
5.0
|
27.0
|
1.0
|
|
Manganese binding site 2 out
of 4 in 7eda
Go back to
Manganese Binding Sites List in 7eda
Manganese binding site 2 out
of 4 in the Structure of Monomeric Photosystem II
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Structure of Monomeric Photosystem II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:23.1
occ:1.00
|
MN2
|
A:OEX401
|
0.0
|
23.1
|
1.0
|
OXT
|
A:ALA344
|
2.0
|
25.2
|
1.0
|
O1
|
A:OEX401
|
2.1
|
21.8
|
1.0
|
O3
|
A:OEX401
|
2.1
|
23.1
|
1.0
|
O2
|
A:OEX401
|
2.2
|
25.9
|
1.0
|
OD1
|
A:ASP342
|
2.3
|
25.1
|
1.0
|
OE1
|
C:GLU354
|
2.5
|
23.8
|
1.0
|
MN1
|
A:OEX401
|
2.9
|
22.3
|
1.0
|
MN3
|
A:OEX401
|
2.9
|
23.4
|
1.0
|
C
|
A:ALA344
|
3.0
|
26.3
|
1.0
|
CG
|
A:ASP342
|
3.3
|
25.1
|
1.0
|
O
|
A:ALA344
|
3.3
|
29.0
|
1.0
|
CA1
|
A:OEX401
|
3.4
|
25.2
|
1.0
|
CD
|
C:GLU354
|
3.4
|
23.8
|
1.0
|
OD2
|
A:ASP342
|
3.5
|
25.1
|
1.0
|
OE2
|
C:GLU354
|
3.6
|
23.8
|
1.0
|
NE2
|
A:HIS337
|
3.7
|
21.5
|
1.0
|
O5
|
A:OEX401
|
3.8
|
23.5
|
1.0
|
OE2
|
A:GLU189
|
4.0
|
13.5
|
1.0
|
CA
|
A:ALA344
|
4.3
|
25.4
|
1.0
|
CD2
|
A:HIS337
|
4.3
|
21.5
|
1.0
|
N
|
A:ALA344
|
4.4
|
27.7
|
1.0
|
O4
|
A:OEX401
|
4.5
|
28.5
|
1.0
|
OE1
|
A:GLU333
|
4.5
|
23.0
|
1.0
|
CB
|
A:ASP342
|
4.6
|
25.1
|
1.0
|
CG
|
C:GLU354
|
4.7
|
23.8
|
1.0
|
CE1
|
A:HIS337
|
4.8
|
21.5
|
1.0
|
NE2
|
A:HIS332
|
4.9
|
16.5
|
1.0
|
CA
|
A:ASP342
|
4.9
|
25.1
|
1.0
|
CB
|
C:GLU354
|
4.9
|
23.8
|
1.0
|
C
|
A:ASP342
|
5.0
|
25.1
|
1.0
|
|
Manganese binding site 3 out
of 4 in 7eda
Go back to
Manganese Binding Sites List in 7eda
Manganese binding site 3 out
of 4 in the Structure of Monomeric Photosystem II
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Structure of Monomeric Photosystem II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:23.4
occ:1.00
|
MN3
|
A:OEX401
|
0.0
|
23.4
|
1.0
|
O2
|
A:OEX401
|
1.9
|
25.9
|
1.0
|
O4
|
A:OEX401
|
2.1
|
28.5
|
1.0
|
OE1
|
A:GLU333
|
2.1
|
23.0
|
1.0
|
O3
|
A:OEX401
|
2.2
|
23.1
|
1.0
|
O5
|
A:OEX401
|
2.3
|
23.5
|
1.0
|
CD
|
A:GLU333
|
2.8
|
23.0
|
1.0
|
MN2
|
A:OEX401
|
2.9
|
23.1
|
1.0
|
MN4
|
A:OEX401
|
3.0
|
27.0
|
1.0
|
OE2
|
A:GLU333
|
3.0
|
23.0
|
1.0
|
OE2
|
C:GLU354
|
3.1
|
23.8
|
1.0
|
OE1
|
C:GLU354
|
3.1
|
23.8
|
1.0
|
MN1
|
A:OEX401
|
3.3
|
22.3
|
1.0
|
CA1
|
A:OEX401
|
3.4
|
25.2
|
1.0
|
CD
|
C:GLU354
|
3.4
|
23.8
|
1.0
|
O1
|
A:OEX401
|
3.5
|
21.8
|
1.0
|
NE2
|
A:HIS337
|
4.2
|
21.5
|
1.0
|
NH2
|
C:ARG357
|
4.3
|
14.2
|
1.0
|
OE2
|
A:GLU189
|
4.3
|
13.5
|
1.0
|
CG
|
A:GLU333
|
4.3
|
23.0
|
1.0
|
OD1
|
A:ASP170
|
4.4
|
12.8
|
1.0
|
OXT
|
A:ALA344
|
4.5
|
25.2
|
1.0
|
CE1
|
A:HIS337
|
4.5
|
21.5
|
1.0
|
CD2
|
A:HIS332
|
4.6
|
16.5
|
1.0
|
NE2
|
A:HIS332
|
4.7
|
16.5
|
1.0
|
OD1
|
A:ASP61
|
4.7
|
25.4
|
1.0
|
CB
|
A:GLU333
|
4.8
|
23.0
|
1.0
|
O
|
A:ALA344
|
4.8
|
29.0
|
1.0
|
OD1
|
A:ASP342
|
4.8
|
25.1
|
1.0
|
CG
|
C:GLU354
|
4.8
|
23.8
|
1.0
|
O
|
A:HOH595
|
5.0
|
28.4
|
1.0
|
|
Manganese binding site 4 out
of 4 in 7eda
Go back to
Manganese Binding Sites List in 7eda
Manganese binding site 4 out
of 4 in the Structure of Monomeric Photosystem II
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Structure of Monomeric Photosystem II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:27.0
occ:1.00
|
MN4
|
A:OEX401
|
0.0
|
27.0
|
1.0
|
O4
|
A:OEX401
|
2.1
|
28.5
|
1.0
|
OE2
|
A:GLU333
|
2.3
|
23.0
|
1.0
|
O
|
A:HOH595
|
2.3
|
28.4
|
1.0
|
O5
|
A:OEX401
|
2.4
|
23.5
|
1.0
|
MN3
|
A:OEX401
|
3.0
|
23.4
|
1.0
|
OD1
|
A:ASP170
|
3.1
|
12.8
|
1.0
|
CD
|
A:GLU333
|
3.2
|
23.0
|
1.0
|
OE1
|
A:GLU333
|
3.6
|
23.0
|
1.0
|
CA1
|
A:OEX401
|
3.8
|
25.2
|
1.0
|
O2
|
A:OEX401
|
3.8
|
25.9
|
1.0
|
CG
|
A:ASP170
|
4.2
|
12.8
|
1.0
|
O
|
A:SER169
|
4.4
|
12.2
|
1.0
|
CG
|
A:GLU333
|
4.5
|
23.0
|
1.0
|
CA
|
A:ASP170
|
4.6
|
12.8
|
1.0
|
NH2
|
C:ARG357
|
4.6
|
14.2
|
1.0
|
CB
|
A:ASP170
|
4.7
|
12.8
|
1.0
|
CG1
|
A:VAL185
|
4.7
|
9.8
|
1.0
|
O3
|
A:OEX401
|
4.8
|
23.1
|
1.0
|
C
|
A:SER169
|
4.9
|
12.2
|
1.0
|
N
|
A:ASP170
|
5.0
|
12.8
|
1.0
|
MN1
|
A:OEX401
|
5.0
|
22.3
|
1.0
|
|
Reference:
H.Yu,
T.Hamaguchi,
Y.Nakajima,
K.Kato,
K.Kawakami,
F.Akita,
K.Yonekura,
J.R.Shen.
Structure of Monomeric Photosystem II To Be Published.
Page generated: Sun Oct 6 08:29:50 2024
|