Manganese in PDB 7dip: Structure of PFGRX1 with Manganese

All present enzymatic activity of Structure of PFGRX1 with Manganese:
1.8.4.2;

The structure of Structure of PFGRX1 with Manganese, PDB code: 7dip was solved by Y.Manickam, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.03 / 1.73
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	48.06, 48.06, 83.226, 90, 90, 120
R / Rfree (%)	14.5 / 17.9

The binding sites of Manganese atom in the Structure of PFGRX1 with Manganese (pdb code 7dip). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of PFGRX1 with Manganese, PDB code: 7dip:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Structure of PFGRX1 with Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of PFGRX1 with Manganese within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn203 b:21.8 occ:0.72 OE1 A:GLU51 2.0 20.7 1.0 O A:HOH417 2.1 23.4 0.7 NE2 A:HIS49 2.2 27.1 1.0 O A:HOH396 2.3 26.0 1.0 O A:HOH366 2.3 30.5 1.0 O A:HOH311 2.3 27.4 1.0 CE1 A:HIS49 2.9 28.2 1.0 CD A:GLU51 3.0 23.1 1.0 OE2 A:GLU51 3.4 19.1 1.0 CD2 A:HIS49 3.5 24.6 1.0 ND1 A:HIS49 4.1 29.1 1.0 O A:HOH375 4.3 26.3 1.0 CG A:GLU51 4.3 17.8 1.0 O A:HOH416 4.4 42.9 1.0 CG A:HIS49 4.4 23.5 1.0 O A:VAL50 4.5 16.6 1.0 CB A:GLU51 4.6 14.7 1.0 CA A:GLU51 4.7 14.0 1.0 O A:HOH408 4.7 36.8 0.5

Manganese binding site 2 out of 4 in the Structure of PFGRX1 with Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of PFGRX1 with Manganese within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn204 b:37.0 occ:0.32 O A:HOH432 1.9 35.5 0.7 ND1 A:HIS49 2.2 29.1 1.0 O A:HOH365 2.2 43.0 1.0 O A:HOH340 2.3 37.6 1.0 O A:HOH408 2.3 36.8 0.5 CE1 A:HIS49 3.0 28.2 1.0 CG A:HIS49 3.1 23.5 1.0 CB A:HIS49 3.5 21.1 1.0 OD1 A:ASN19 3.8 18.9 1.0 NE2 A:HIS49 4.0 27.1 1.0 CD2 A:HIS49 4.1 24.6 1.0 CA A:HIS49 4.2 14.7 1.0 O A:MET48 4.3 17.8 1.0 O A:HOH357 4.5 22.7 1.0 O A:HOH385 4.6 30.2 1.0 CG A:ASN19 4.7 20.8 1.0 O A:HOH381 4.7 25.8 1.0 ND2 A:ASN19 4.9 21.9 1.0 N A:HIS49 5.0 16.6 1.0

Manganese binding site 3 out of 4 in the Structure of PFGRX1 with Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of PFGRX1 with Manganese within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn205 b:37.0 occ:0.33 O A:HOH413 2.3 49.4 1.0 O A:HOH425 2.5 55.5 0.8 OE1 A:GLU28 2.6 41.2 1.0 CD A:GLU28 3.8 42.1 1.0 OE2 A:GLU28 4.3 47.9 1.0 O A:HOH427 4.9 38.7 0.7 CG A:GLU28 4.9 33.2 1.0 CB A:GLU28 5.0 28.3 1.0

Manganese binding site 4 out of 4 in the Structure of PFGRX1 with Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of PFGRX1 with Manganese within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn206 b:42.1 occ:0.43 OD1 A:ASN43 2.1 32.6 0.5 O A:HOH399 2.4 61.3 1.0 CG A:ASN43 3.1 29.4 0.5 ND2 A:ASN43 3.6 30.7 0.5 O A:LYS40 4.2 20.6 1.0 CB A:ASN43 4.5 24.3 0.5 CB A:ASN43 4.5 24.1 0.5 O A:GLY41 4.5 23.9 1.0 OD1 A:ASN43 4.6 35.0 0.5 CA A:ASN43 4.7 21.0 0.5 CA A:ASN43 4.7 20.9 0.5 N A:ASN43 4.7 19.7 1.0 O A:HOH358 4.7 31.8 0.6 CG A:ASN43 4.8 29.3 0.5 C A:GLY41 4.9 21.0 1.0 CA A:GLY41 5.0 18.5 1.0

Y.Manickam, A.Sharma. Interaction of Metals with PFGRX1 To Be Published.