Manganese in PDB 7d1t: Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Enzymatic activity of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
All present enzymatic activity of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution:
1.10.3.9;
Other elements in 7d1t:
The structure of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
(pdb code 7d1t). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the
Cryo-Em Structure of Psii at 1.95 Angstrom Resolution, PDB code: 7d1t:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Manganese binding site 1 out
of 8 in 7d1t
Go back to
Manganese Binding Sites List in 7d1t
Manganese binding site 1 out
of 8 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:11.4
occ:0.87
|
MN1
|
A:OEX401
|
0.0
|
11.4
|
0.9
|
|
OE2
|
A:GLU189
|
2.1
|
8.6
|
1.0
|
|
O1
|
A:OEX401
|
2.1
|
11.5
|
0.9
|
|
O3
|
A:OEX401
|
2.1
|
11.5
|
0.9
|
|
OD2
|
A:ASP342
|
2.2
|
15.3
|
1.0
|
|
NE2
|
A:HIS332
|
2.3
|
11.9
|
1.0
|
|
O5
|
A:OEX401
|
2.7
|
11.4
|
0.9
|
|
MN2
|
A:OEX401
|
2.8
|
11.7
|
0.9
|
|
CD
|
A:GLU189
|
2.9
|
8.5
|
1.0
|
|
CG
|
A:ASP342
|
3.2
|
15.4
|
1.0
|
|
CE1
|
A:HIS332
|
3.2
|
11.9
|
1.0
|
|
CD2
|
A:HIS332
|
3.3
|
11.9
|
1.0
|
|
OE1
|
A:GLU189
|
3.3
|
8.5
|
1.0
|
|
MN3
|
A:OEX401
|
3.4
|
11.5
|
0.9
|
|
OD1
|
A:ASP342
|
3.4
|
15.4
|
1.0
|
|
CA1
|
A:OEX401
|
3.5
|
11.3
|
0.9
|
|
O2
|
A:OEX401
|
3.8
|
11.5
|
0.9
|
|
CG
|
A:GLU189
|
4.0
|
8.4
|
1.0
|
|
NE2
|
A:HIS337
|
4.1
|
14.2
|
1.0
|
|
OE1
|
A:GLU333
|
4.1
|
12.7
|
1.0
|
|
O
|
A:HOH581
|
4.2
|
15.9
|
1.0
|
|
ND1
|
A:HIS332
|
4.3
|
11.9
|
1.0
|
|
O
|
A:HOH509
|
4.4
|
11.8
|
1.0
|
|
OE1
|
C:GLU354
|
4.4
|
13.3
|
1.0
|
|
CG
|
A:HIS332
|
4.4
|
11.9
|
1.0
|
|
OXT
|
A:ALA344
|
4.4
|
16.0
|
0.5
|
|
CB
|
A:ASP342
|
4.5
|
15.5
|
1.0
|
|
OE2
|
C:GLU354
|
4.7
|
13.3
|
1.0
|
|
CG1
|
A:VAL185
|
4.7
|
6.9
|
1.0
|
|
CE1
|
A:HIS337
|
4.7
|
14.2
|
1.0
|
|
CD
|
A:GLU333
|
4.9
|
12.7
|
1.0
|
|
CD
|
C:GLU354
|
5.0
|
13.3
|
1.0
|
|
Manganese binding site 2 out
of 8 in 7d1t
Go back to
Manganese Binding Sites List in 7d1t
Manganese binding site 2 out
of 8 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:11.7
occ:0.87
|
MN2
|
A:OEX401
|
0.0
|
11.7
|
0.9
|
|
OXT
|
A:ALA344
|
1.9
|
16.0
|
0.5
|
|
OD1
|
A:ASP342
|
2.1
|
15.4
|
1.0
|
|
O1
|
A:OEX401
|
2.2
|
11.5
|
0.9
|
|
OE1
|
C:GLU354
|
2.2
|
13.3
|
1.0
|
|
O2
|
A:OEX401
|
2.2
|
11.5
|
0.9
|
|
O3
|
A:OEX401
|
2.3
|
11.5
|
0.9
|
|
MN1
|
A:OEX401
|
2.8
|
11.4
|
0.9
|
|
C
|
A:ALA344
|
2.9
|
16.1
|
0.5
|
|
CG
|
A:ASP342
|
2.9
|
15.4
|
1.0
|
|
OD2
|
A:ASP342
|
3.1
|
15.3
|
1.0
|
|
MN3
|
A:OEX401
|
3.1
|
11.5
|
0.9
|
|
CD
|
C:GLU354
|
3.1
|
13.3
|
1.0
|
|
O
|
A:ALA344
|
3.4
|
16.0
|
0.5
|
|
OE2
|
C:GLU354
|
3.4
|
13.3
|
1.0
|
|
CA1
|
A:OEX401
|
3.5
|
11.3
|
0.9
|
|
CA
|
A:ALA344
|
4.0
|
16.1
|
0.5
|
|
O
|
A:ALA344
|
4.1
|
16.0
|
0.5
|
|
NE2
|
A:HIS337
|
4.1
|
14.2
|
1.0
|
|
N
|
A:ALA344
|
4.1
|
16.1
|
0.5
|
|
CA
|
A:ALA344
|
4.2
|
16.1
|
0.5
|
|
O
|
A:HOH581
|
4.2
|
15.9
|
1.0
|
|
O5
|
A:OEX401
|
4.2
|
11.4
|
0.9
|
|
C
|
A:ALA344
|
4.3
|
16.1
|
0.5
|
|
CB
|
A:ASP342
|
4.3
|
15.5
|
1.0
|
|
O
|
C:HOH766
|
4.4
|
16.7
|
1.0
|
|
CG
|
C:GLU354
|
4.5
|
13.3
|
1.0
|
|
N
|
A:ALA344
|
4.5
|
16.1
|
0.5
|
|
CD2
|
A:HIS337
|
4.6
|
14.2
|
1.0
|
|
OE2
|
A:GLU189
|
4.6
|
8.6
|
1.0
|
|
C
|
A:ASP342
|
4.7
|
15.7
|
1.0
|
|
CA
|
A:ASP342
|
4.7
|
15.6
|
1.0
|
|
N
|
A:LEU343
|
4.8
|
15.8
|
0.5
|
|
OE1
|
A:GLU333
|
4.8
|
12.7
|
1.0
|
|
NE2
|
A:HIS332
|
4.8
|
11.9
|
1.0
|
|
N
|
A:LEU343
|
4.9
|
15.8
|
0.5
|
|
CB
|
C:GLU354
|
4.9
|
13.2
|
1.0
|
|
C
|
A:LEU343
|
4.9
|
16.0
|
0.5
|
|
Manganese binding site 3 out
of 8 in 7d1t
Go back to
Manganese Binding Sites List in 7d1t
Manganese binding site 3 out
of 8 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:11.5
occ:0.87
|
MN3
|
A:OEX401
|
0.0
|
11.5
|
0.9
|
|
OE1
|
A:GLU333
|
2.1
|
12.7
|
1.0
|
|
OE2
|
C:GLU354
|
2.2
|
13.3
|
1.0
|
|
O2
|
A:OEX401
|
2.2
|
11.5
|
0.9
|
|
O4
|
A:OEX401
|
2.3
|
11.5
|
0.9
|
|
O3
|
A:OEX401
|
2.5
|
11.5
|
0.9
|
|
O5
|
A:OEX401
|
2.6
|
11.4
|
0.9
|
|
MN4
|
A:OEX401
|
3.0
|
11.3
|
0.9
|
|
CD
|
A:GLU333
|
3.0
|
12.7
|
1.0
|
|
MN2
|
A:OEX401
|
3.1
|
11.7
|
0.9
|
|
CD
|
C:GLU354
|
3.1
|
13.3
|
1.0
|
|
OE2
|
A:GLU333
|
3.3
|
12.8
|
1.0
|
|
CA1
|
A:OEX401
|
3.3
|
11.3
|
0.9
|
|
MN1
|
A:OEX401
|
3.4
|
11.4
|
0.9
|
|
OE1
|
C:GLU354
|
3.4
|
13.3
|
1.0
|
|
O
|
C:HOH657
|
3.7
|
14.2
|
1.0
|
|
O1
|
A:OEX401
|
4.0
|
11.5
|
0.9
|
|
NH2
|
C:ARG357
|
4.0
|
12.8
|
1.0
|
|
OD2
|
A:ASP170
|
4.1
|
8.4
|
1.0
|
|
O
|
A:HOH514
|
4.3
|
11.8
|
1.0
|
|
OD1
|
A:ASP170
|
4.3
|
8.4
|
1.0
|
|
OXT
|
A:ALA344
|
4.4
|
16.0
|
0.5
|
|
CG
|
A:GLU333
|
4.4
|
12.7
|
1.0
|
|
NE2
|
A:HIS332
|
4.4
|
11.9
|
1.0
|
|
NE2
|
A:HIS337
|
4.5
|
14.2
|
1.0
|
|
CG
|
C:GLU354
|
4.5
|
13.3
|
1.0
|
|
O
|
A:HOH563
|
4.5
|
13.1
|
1.0
|
|
CG
|
A:ASP170
|
4.7
|
8.4
|
1.0
|
|
CD2
|
A:HIS332
|
4.7
|
11.9
|
1.0
|
|
CB
|
A:GLU333
|
4.8
|
12.6
|
1.0
|
|
OD1
|
A:ASP342
|
4.8
|
15.4
|
1.0
|
|
O
|
A:HOH590
|
4.8
|
12.6
|
1.0
|
|
O
|
A:ALA344
|
4.8
|
16.0
|
0.5
|
|
OD2
|
A:ASP342
|
5.0
|
15.3
|
1.0
|
|
CZ
|
C:ARG357
|
5.0
|
12.8
|
1.0
|
|
Manganese binding site 4 out
of 8 in 7d1t
Go back to
Manganese Binding Sites List in 7d1t
Manganese binding site 4 out
of 8 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:11.3
occ:0.87
|
MN4
|
A:OEX401
|
0.0
|
11.3
|
0.9
|
|
O4
|
A:OEX401
|
1.8
|
11.5
|
0.9
|
|
O
|
A:HOH563
|
2.0
|
13.1
|
1.0
|
|
OE2
|
A:GLU333
|
2.1
|
12.8
|
1.0
|
|
OD2
|
A:ASP170
|
2.2
|
8.4
|
1.0
|
|
O
|
A:HOH590
|
2.4
|
12.6
|
1.0
|
|
O5
|
A:OEX401
|
2.5
|
11.4
|
0.9
|
|
MN3
|
A:OEX401
|
3.0
|
11.5
|
0.9
|
|
CD
|
A:GLU333
|
3.1
|
12.7
|
1.0
|
|
CG
|
A:ASP170
|
3.2
|
8.4
|
1.0
|
|
OE1
|
A:GLU333
|
3.3
|
12.7
|
1.0
|
|
CA1
|
A:OEX401
|
3.7
|
11.3
|
0.9
|
|
OD1
|
A:ASP170
|
3.7
|
8.4
|
1.0
|
|
O
|
A:HOH620
|
3.8
|
14.7
|
1.0
|
|
O
|
A:HOH514
|
3.9
|
11.8
|
1.0
|
|
O
|
A:HOH628
|
4.0
|
11.0
|
1.0
|
|
O
|
A:HOH629
|
4.0
|
11.8
|
1.0
|
|
O2
|
A:OEX401
|
4.1
|
11.5
|
0.9
|
|
O
|
A:SER169
|
4.3
|
8.3
|
1.0
|
|
CB
|
A:ASP170
|
4.4
|
8.3
|
1.0
|
|
CG
|
A:GLU333
|
4.4
|
12.7
|
1.0
|
|
O
|
A:HOH529
|
4.4
|
12.9
|
1.0
|
|
OD2
|
A:ASP61
|
4.5
|
12.6
|
1.0
|
|
CA
|
A:ASP170
|
4.5
|
8.2
|
1.0
|
|
NH2
|
C:ARG357
|
4.6
|
12.8
|
1.0
|
|
OE2
|
C:GLU354
|
4.8
|
13.3
|
1.0
|
|
C
|
A:SER169
|
4.8
|
8.3
|
1.0
|
|
N
|
A:ASP170
|
4.9
|
8.2
|
1.0
|
|
O
|
A:HOH517
|
4.9
|
10.3
|
1.0
|
|
Manganese binding site 5 out
of 8 in 7d1t
Go back to
Manganese Binding Sites List in 7d1t
Manganese binding site 5 out
of 8 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn401
b:11.4
occ:0.87
|
MN1
|
a:OEX401
|
0.0
|
11.4
|
0.9
|
|
OE2
|
a:GLU189
|
2.1
|
8.6
|
1.0
|
|
O1
|
a:OEX401
|
2.1
|
11.5
|
0.9
|
|
O3
|
a:OEX401
|
2.1
|
11.5
|
0.9
|
|
OD2
|
a:ASP342
|
2.2
|
15.3
|
1.0
|
|
NE2
|
a:HIS332
|
2.3
|
11.9
|
1.0
|
|
O5
|
a:OEX401
|
2.7
|
11.4
|
0.9
|
|
MN2
|
a:OEX401
|
2.8
|
11.7
|
0.9
|
|
CD
|
a:GLU189
|
2.9
|
8.5
|
1.0
|
|
CG
|
a:ASP342
|
3.2
|
15.4
|
1.0
|
|
CE1
|
a:HIS332
|
3.2
|
11.9
|
1.0
|
|
CD2
|
a:HIS332
|
3.3
|
11.9
|
1.0
|
|
OE1
|
a:GLU189
|
3.3
|
8.5
|
1.0
|
|
MN3
|
a:OEX401
|
3.4
|
11.5
|
0.9
|
|
OD1
|
a:ASP342
|
3.4
|
15.4
|
1.0
|
|
CA1
|
a:OEX401
|
3.5
|
11.3
|
0.9
|
|
O2
|
a:OEX401
|
3.8
|
11.5
|
0.9
|
|
CG
|
a:GLU189
|
4.0
|
8.4
|
1.0
|
|
NE2
|
a:HIS337
|
4.1
|
14.2
|
1.0
|
|
OE1
|
a:GLU333
|
4.1
|
12.7
|
1.0
|
|
O
|
a:HOH581
|
4.2
|
15.9
|
1.0
|
|
ND1
|
a:HIS332
|
4.3
|
11.9
|
1.0
|
|
O
|
a:HOH509
|
4.4
|
11.8
|
1.0
|
|
OE1
|
c:GLU354
|
4.4
|
13.3
|
1.0
|
|
CG
|
a:HIS332
|
4.4
|
11.9
|
1.0
|
|
OXT
|
a:ALA344
|
4.4
|
16.0
|
0.5
|
|
CB
|
a:ASP342
|
4.5
|
15.5
|
1.0
|
|
OE2
|
c:GLU354
|
4.7
|
13.3
|
1.0
|
|
CG1
|
a:VAL185
|
4.7
|
6.9
|
1.0
|
|
CE1
|
a:HIS337
|
4.7
|
14.2
|
1.0
|
|
CD
|
a:GLU333
|
4.9
|
12.7
|
1.0
|
|
CD
|
c:GLU354
|
5.0
|
13.3
|
1.0
|
|
Manganese binding site 6 out
of 8 in 7d1t
Go back to
Manganese Binding Sites List in 7d1t
Manganese binding site 6 out
of 8 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn401
b:11.7
occ:0.87
|
MN2
|
a:OEX401
|
0.0
|
11.7
|
0.9
|
|
OXT
|
a:ALA344
|
1.9
|
16.0
|
0.5
|
|
OD1
|
a:ASP342
|
2.1
|
15.4
|
1.0
|
|
O1
|
a:OEX401
|
2.2
|
11.5
|
0.9
|
|
OE1
|
c:GLU354
|
2.2
|
13.3
|
1.0
|
|
O2
|
a:OEX401
|
2.2
|
11.5
|
0.9
|
|
O3
|
a:OEX401
|
2.3
|
11.5
|
0.9
|
|
MN1
|
a:OEX401
|
2.8
|
11.4
|
0.9
|
|
C
|
a:ALA344
|
2.9
|
16.1
|
0.5
|
|
CG
|
a:ASP342
|
2.9
|
15.4
|
1.0
|
|
OD2
|
a:ASP342
|
3.1
|
15.3
|
1.0
|
|
MN3
|
a:OEX401
|
3.1
|
11.5
|
0.9
|
|
CD
|
c:GLU354
|
3.1
|
13.3
|
1.0
|
|
O
|
a:ALA344
|
3.4
|
16.0
|
0.5
|
|
OE2
|
c:GLU354
|
3.4
|
13.3
|
1.0
|
|
CA1
|
a:OEX401
|
3.5
|
11.3
|
0.9
|
|
CA
|
a:ALA344
|
4.0
|
16.1
|
0.5
|
|
O
|
a:ALA344
|
4.1
|
16.0
|
0.5
|
|
NE2
|
a:HIS337
|
4.1
|
14.2
|
1.0
|
|
N
|
a:ALA344
|
4.1
|
16.1
|
0.5
|
|
CA
|
a:ALA344
|
4.2
|
16.1
|
0.5
|
|
O
|
a:HOH581
|
4.2
|
15.9
|
1.0
|
|
O5
|
a:OEX401
|
4.2
|
11.4
|
0.9
|
|
C
|
a:ALA344
|
4.3
|
16.1
|
0.5
|
|
CB
|
a:ASP342
|
4.3
|
15.5
|
1.0
|
|
O
|
c:HOH766
|
4.4
|
16.7
|
1.0
|
|
CG
|
c:GLU354
|
4.5
|
13.3
|
1.0
|
|
N
|
a:ALA344
|
4.5
|
16.1
|
0.5
|
|
CD2
|
a:HIS337
|
4.6
|
14.2
|
1.0
|
|
OE2
|
a:GLU189
|
4.6
|
8.6
|
1.0
|
|
C
|
a:ASP342
|
4.7
|
15.7
|
1.0
|
|
CA
|
a:ASP342
|
4.7
|
15.6
|
1.0
|
|
N
|
a:LEU343
|
4.8
|
15.8
|
0.5
|
|
OE1
|
a:GLU333
|
4.8
|
12.7
|
1.0
|
|
NE2
|
a:HIS332
|
4.8
|
11.9
|
1.0
|
|
N
|
a:LEU343
|
4.9
|
15.8
|
0.5
|
|
C
|
a:LEU343
|
4.9
|
16.0
|
0.5
|
|
CB
|
c:GLU354
|
4.9
|
13.2
|
1.0
|
|
Manganese binding site 7 out
of 8 in 7d1t
Go back to
Manganese Binding Sites List in 7d1t
Manganese binding site 7 out
of 8 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn401
b:11.5
occ:0.87
|
MN3
|
a:OEX401
|
0.0
|
11.5
|
0.9
|
|
OE1
|
a:GLU333
|
2.1
|
12.7
|
1.0
|
|
OE2
|
c:GLU354
|
2.2
|
13.3
|
1.0
|
|
O2
|
a:OEX401
|
2.2
|
11.5
|
0.9
|
|
O4
|
a:OEX401
|
2.3
|
11.5
|
0.9
|
|
O3
|
a:OEX401
|
2.5
|
11.5
|
0.9
|
|
O5
|
a:OEX401
|
2.6
|
11.4
|
0.9
|
|
MN4
|
a:OEX401
|
3.0
|
11.3
|
0.9
|
|
CD
|
a:GLU333
|
3.0
|
12.7
|
1.0
|
|
MN2
|
a:OEX401
|
3.1
|
11.7
|
0.9
|
|
CD
|
c:GLU354
|
3.1
|
13.3
|
1.0
|
|
OE2
|
a:GLU333
|
3.3
|
12.8
|
1.0
|
|
CA1
|
a:OEX401
|
3.3
|
11.3
|
0.9
|
|
MN1
|
a:OEX401
|
3.4
|
11.4
|
0.9
|
|
OE1
|
c:GLU354
|
3.4
|
13.3
|
1.0
|
|
O
|
c:HOH658
|
3.7
|
14.2
|
1.0
|
|
O1
|
a:OEX401
|
4.0
|
11.5
|
0.9
|
|
NH2
|
c:ARG357
|
4.0
|
12.8
|
1.0
|
|
OD2
|
a:ASP170
|
4.1
|
8.4
|
1.0
|
|
O
|
a:HOH514
|
4.3
|
11.8
|
1.0
|
|
OD1
|
a:ASP170
|
4.3
|
8.4
|
1.0
|
|
OXT
|
a:ALA344
|
4.4
|
16.0
|
0.5
|
|
CG
|
a:GLU333
|
4.4
|
12.7
|
1.0
|
|
NE2
|
a:HIS332
|
4.4
|
11.9
|
1.0
|
|
NE2
|
a:HIS337
|
4.5
|
14.2
|
1.0
|
|
CG
|
c:GLU354
|
4.5
|
13.3
|
1.0
|
|
O
|
a:HOH563
|
4.5
|
13.1
|
1.0
|
|
CG
|
a:ASP170
|
4.7
|
8.4
|
1.0
|
|
CD2
|
a:HIS332
|
4.7
|
11.9
|
1.0
|
|
CB
|
a:GLU333
|
4.8
|
12.6
|
1.0
|
|
OD1
|
a:ASP342
|
4.8
|
15.4
|
1.0
|
|
O
|
a:HOH590
|
4.8
|
12.6
|
1.0
|
|
O
|
a:ALA344
|
4.8
|
16.0
|
0.5
|
|
OD2
|
a:ASP342
|
5.0
|
15.3
|
1.0
|
|
CZ
|
c:ARG357
|
5.0
|
12.8
|
1.0
|
|
Manganese binding site 8 out
of 8 in 7d1t
Go back to
Manganese Binding Sites List in 7d1t
Manganese binding site 8 out
of 8 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn401
b:11.3
occ:0.87
|
MN4
|
a:OEX401
|
0.0
|
11.3
|
0.9
|
|
O4
|
a:OEX401
|
1.8
|
11.5
|
0.9
|
|
O
|
a:HOH563
|
2.0
|
13.1
|
1.0
|
|
OE2
|
a:GLU333
|
2.1
|
12.8
|
1.0
|
|
OD2
|
a:ASP170
|
2.2
|
8.4
|
1.0
|
|
O
|
a:HOH590
|
2.4
|
12.6
|
1.0
|
|
O5
|
a:OEX401
|
2.5
|
11.4
|
0.9
|
|
MN3
|
a:OEX401
|
3.0
|
11.5
|
0.9
|
|
CD
|
a:GLU333
|
3.1
|
12.7
|
1.0
|
|
CG
|
a:ASP170
|
3.2
|
8.4
|
1.0
|
|
OE1
|
a:GLU333
|
3.3
|
12.7
|
1.0
|
|
CA1
|
a:OEX401
|
3.7
|
11.3
|
0.9
|
|
OD1
|
a:ASP170
|
3.7
|
8.4
|
1.0
|
|
O
|
a:HOH620
|
3.8
|
14.7
|
1.0
|
|
O
|
a:HOH514
|
3.9
|
11.8
|
1.0
|
|
O
|
a:HOH628
|
4.0
|
11.0
|
1.0
|
|
O
|
a:HOH629
|
4.0
|
11.8
|
1.0
|
|
O2
|
a:OEX401
|
4.1
|
11.5
|
0.9
|
|
O
|
a:SER169
|
4.3
|
8.3
|
1.0
|
|
CB
|
a:ASP170
|
4.4
|
8.3
|
1.0
|
|
CG
|
a:GLU333
|
4.4
|
12.7
|
1.0
|
|
O
|
a:HOH529
|
4.4
|
12.9
|
1.0
|
|
OD2
|
a:ASP61
|
4.5
|
12.6
|
1.0
|
|
CA
|
a:ASP170
|
4.5
|
8.2
|
1.0
|
|
NH2
|
c:ARG357
|
4.6
|
12.8
|
1.0
|
|
OE2
|
c:GLU354
|
4.8
|
13.3
|
1.0
|
|
C
|
a:SER169
|
4.8
|
8.3
|
1.0
|
|
N
|
a:ASP170
|
4.9
|
8.2
|
1.0
|
|
O
|
a:HOH517
|
4.9
|
10.3
|
1.0
|
|
Reference:
K.Kato,
N.Miyazaki,
T.Hamaguchi,
Y.Nakajima,
F.Akita,
K.Yonekura,
J.R.Shen.
High-Resolution Cryo-Em Structure of Photosystem II Reveals Damage From High-Dose Electron Beams Commun Biol 2021.
ISSN: ESSN 2399-3642
DOI: 10.1038/S42003-021-01919-3
Page generated: Sun Oct 6 08:20:20 2024
|
