Atomistry » Manganese » PDB 7bmf-7d6g » 7cx7
Atomistry »
  Manganese »
    PDB 7bmf-7d6g »
      7cx7 »

Manganese in PDB 7cx7: Crystal Structure of Arabinose Isomerase From Hybrid AI8

Enzymatic activity of Crystal Structure of Arabinose Isomerase From Hybrid AI8

All present enzymatic activity of Crystal Structure of Arabinose Isomerase From Hybrid AI8:
5.3.1.4;

Protein crystallography data

The structure of Crystal Structure of Arabinose Isomerase From Hybrid AI8, PDB code: 7cx7 was solved by N.K.Q.Hoang, I.Dhanasingh, T.P.Cao, J.Y.Sung, S.M.Shin, D.W.Lee, S.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.59 / 2.49
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 204.591, 81.907, 192.001, 90, 117.9, 90
R / Rfree (%) 19.2 / 26.8

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Arabinose Isomerase From Hybrid AI8 (pdb code 7cx7). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 9 binding sites of Manganese where determined in the Crystal Structure of Arabinose Isomerase From Hybrid AI8, PDB code: 7cx7:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Manganese binding site 1 out of 9 in 7cx7

Go back to Manganese Binding Sites List in 7cx7
Manganese binding site 1 out of 9 in the Crystal Structure of Arabinose Isomerase From Hybrid AI8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Arabinose Isomerase From Hybrid AI8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn503

b:41.0
occ:1.00
 NE2 A:HIS448 2.1 43.7 1.0
NE2 A:HIS349 2.3 42.6 1.0
OE2 A:GLU307 2.4 60.0 1.0
O A:HOH642 2.4 40.6 1.0
OE1 A:GLU307 2.8 59.9 1.0
CD A:GLU307 2.9 50.4 1.0
OE2 A:GLU332 2.9 49.6 1.0
OE1 A:GLU332 3.0 53.6 1.0
CE1 A:HIS448 3.0 42.9 1.0
CD A:GLU332 3.1 46.5 1.0
CD2 A:HIS349 3.1 41.0 1.0
CD2 A:HIS448 3.2 37.9 1.0
CE1 A:HIS349 3.3 38.0 1.0
ND1 A:HIS448 4.2 36.1 1.0
CG A:GLU332 4.3 44.5 1.0
CG A:HIS448 4.3 34.8 1.0
CG A:HIS349 4.3 40.6 1.0
ND1 A:HIS349 4.3 35.4 1.0
CD2 A:HIS447 4.3 41.2 1.0
NE2 A:HIS447 4.4 40.7 1.0
CG A:GLU307 4.4 45.7 1.0
CB A:GLU332 4.7 39.8 1.0
CZ A:PHE330 4.8 29.6 1.0

Manganese binding site 2 out of 9 in 7cx7

Go back to Manganese Binding Sites List in 7cx7
Manganese binding site 2 out of 9 in the Crystal Structure of Arabinose Isomerase From Hybrid AI8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Arabinose Isomerase From Hybrid AI8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn504

b:61.1
occ:1.00
 O B:GLY398 2.1 30.9 1.0
O A:GLY398 2.2 27.3 1.0
O A:HOH649 2.3 29.6 1.0
C B:GLY398 3.1 27.4 1.0
OD2 B:ASP195 3.2 41.2 1.0
C A:GLY398 3.3 25.2 1.0
OD2 A:ASP195 3.5 39.2 1.0
CA B:GLY398 3.6 29.7 1.0
CB B:ASP195 3.8 43.0 1.0
CA A:GLY398 3.9 22.2 1.0
CB A:ASP195 3.9 38.9 1.0
O B:HOH606 3.9 30.8 1.0
CG B:ASP195 4.0 40.0 1.0
OD2 B:ASP396 4.0 44.2 1.0
O B:HOH660 4.1 39.1 1.0
OD1 B:ASP396 4.1 34.0 1.0
CG A:ASP195 4.2 41.2 1.0
O A:HOH662 4.2 27.7 1.0
O B:HOH652 4.3 33.0 1.0
N B:HIS399 4.3 27.1 1.0
CG B:ASP396 4.5 39.2 1.0
N A:HIS399 4.5 27.1 1.0
OD2 A:ASP396 4.6 41.9 1.0
OD1 A:ASP396 4.7 38.1 1.0
N B:GLY398 4.7 29.3 1.0
CA B:HIS399 4.8 29.9 1.0
CA A:HIS399 4.9 29.1 1.0
CG A:ASP396 5.0 35.6 1.0
N A:GLY398 5.0 21.1 1.0

Manganese binding site 3 out of 9 in 7cx7

Go back to Manganese Binding Sites List in 7cx7
Manganese binding site 3 out of 9 in the Crystal Structure of Arabinose Isomerase From Hybrid AI8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Arabinose Isomerase From Hybrid AI8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn502

b:45.5
occ:1.00
 NE2 B:HIS349 2.1 47.9 1.0
NE2 B:HIS448 2.2 63.4 1.0
OE1 B:GLU332 2.4 57.8 1.0
OE1 B:GLU307 2.4 43.4 1.0
OE2 B:GLU307 2.7 52.6 1.0
CD B:GLU307 2.8 42.5 1.0
O B:HOH647 2.9 26.2 1.0
CE1 B:HIS349 3.0 54.5 1.0
CD B:GLU332 3.0 50.5 1.0
CE1 B:HIS448 3.1 59.2 1.0
OE2 B:GLU332 3.2 60.4 1.0
CD2 B:HIS448 3.2 56.9 1.0
CD2 B:HIS349 3.2 53.1 1.0
ND1 B:HIS349 4.1 51.1 1.0
NE2 B:HIS447 4.2 44.1 1.0
CD2 B:HIS447 4.2 45.0 1.0
CG B:GLU332 4.2 48.6 1.0
CG B:GLU307 4.3 39.8 1.0
ND1 B:HIS448 4.3 50.2 1.0
CG B:HIS349 4.3 51.9 1.0
CG B:HIS448 4.3 48.3 1.0
CZ B:PHE330 4.8 32.7 1.0
CB B:GLU332 4.9 44.2 1.0
CB B:GLU307 4.9 34.5 1.0

Manganese binding site 4 out of 9 in 7cx7

Go back to Manganese Binding Sites List in 7cx7
Manganese binding site 4 out of 9 in the Crystal Structure of Arabinose Isomerase From Hybrid AI8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Arabinose Isomerase From Hybrid AI8 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn504

b:58.0
occ:1.00
 O D:GLY398 2.1 34.6 1.0
O C:GLY398 2.1 36.5 1.0
O C:HOH611 2.2 27.4 1.0
O D:HOH620 2.3 32.3 1.0
O D:HOH602 2.3 29.9 1.0
C D:GLY398 3.1 32.5 1.0
C C:GLY398 3.3 32.6 1.0
CA D:GLY398 3.5 31.6 1.0
OD2 C:ASP195 3.6 38.2 1.0
CB C:ASP195 3.8 38.2 1.0
O C:HOH623 4.0 40.1 1.0
CA C:GLY398 4.0 29.9 1.0
O C:HOH618 4.0 25.4 1.0
O D:HOH603 4.1 33.3 1.0
CG C:ASP195 4.2 39.4 1.0
OD2 D:ASP195 4.2 44.5 1.0
CB D:ASP195 4.2 35.5 1.0
OD2 C:ASP396 4.3 46.6 1.0
OD1 D:ASP396 4.3 38.1 1.0
N D:HIS399 4.3 32.7 1.0
OD1 C:ASP396 4.3 45.7 1.0
N C:HIS399 4.3 34.2 1.0
O D:HOH646 4.4 32.3 1.0
OD2 D:ASP396 4.6 42.7 1.0
CA C:HIS399 4.7 31.6 1.0
N D:GLY398 4.7 31.4 1.0
CG C:ASP396 4.7 46.5 1.0
CG D:ASP195 4.8 40.0 1.0
CA D:HIS399 4.8 30.1 1.0
CG D:ASP396 4.8 40.5 1.0

Manganese binding site 5 out of 9 in 7cx7

Go back to Manganese Binding Sites List in 7cx7
Manganese binding site 5 out of 9 in the Crystal Structure of Arabinose Isomerase From Hybrid AI8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Crystal Structure of Arabinose Isomerase From Hybrid AI8 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn505

b:45.4
occ:1.00
 NE2 C:HIS448 2.1 53.3 1.0
OE1 C:GLU307 2.2 50.0 1.0
NE2 C:HIS349 2.3 67.3 1.0
O C:HOH649 2.3 42.7 1.0
OE2 C:GLU332 2.6 51.7 1.0
OE1 C:GLU332 2.6 60.8 1.0
CD C:GLU332 2.9 45.5 1.0
CE1 C:HIS448 3.0 49.8 1.0
CD2 C:HIS349 3.1 66.6 1.0
CD2 C:HIS448 3.1 50.6 1.0
CD C:GLU307 3.3 58.0 1.0
CE1 C:HIS349 3.3 62.5 1.0
OE2 C:GLU307 3.7 63.9 1.0
ND1 C:HIS448 4.1 44.3 1.0
CG C:HIS448 4.2 41.9 1.0
CG C:GLU332 4.2 44.5 1.0
NE2 C:HIS447 4.2 50.8 1.0
CG C:HIS349 4.3 64.2 1.0
ND1 C:HIS349 4.3 59.8 1.0
O F:HOH645 4.4 36.5 1.0
CD2 C:HIS447 4.4 49.1 1.0
CG C:GLU307 4.5 62.5 1.0
CB C:GLU332 4.8 39.9 1.0
CZ C:PHE330 4.9 30.2 1.0

Manganese binding site 6 out of 9 in 7cx7

Go back to Manganese Binding Sites List in 7cx7
Manganese binding site 6 out of 9 in the Crystal Structure of Arabinose Isomerase From Hybrid AI8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Crystal Structure of Arabinose Isomerase From Hybrid AI8 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn501

b:43.1
occ:1.00
 NE2 D:HIS349 2.2 47.3 1.0
NE2 D:HIS448 2.3 50.6 1.0
OE2 D:GLU307 2.6 49.3 1.0
OE1 D:GLU332 2.6 52.3 1.0
OE2 D:GLU332 2.8 52.6 1.0
CD D:GLU332 2.9 48.9 1.0
CD D:GLU307 3.1 51.7 1.0
OE1 D:GLU307 3.1 52.3 1.0
CD2 D:HIS349 3.1 51.4 1.0
CD2 D:HIS448 3.2 46.2 1.0
CE1 D:HIS349 3.3 45.4 1.0
CE1 D:HIS448 3.3 49.4 1.0
CE1 D:HIS447 3.8 49.4 1.0
ND1 D:HIS447 4.0 46.1 1.0
CG D:GLU332 4.1 48.7 1.0
CG D:HIS349 4.3 47.0 1.0
ND1 D:HIS349 4.3 43.3 1.0
CG D:GLU307 4.4 48.4 1.0
ND1 D:HIS448 4.4 49.0 1.0
CG D:HIS448 4.4 41.9 1.0
CB D:GLU332 4.7 40.5 1.0
CZ D:PHE330 4.9 34.6 1.0

Manganese binding site 7 out of 9 in 7cx7

Go back to Manganese Binding Sites List in 7cx7
Manganese binding site 7 out of 9 in the Crystal Structure of Arabinose Isomerase From Hybrid AI8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Crystal Structure of Arabinose Isomerase From Hybrid AI8 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn503

b:70.1
occ:1.00
 O E:GLY398 1.9 39.0 1.0
O E:HOH610 2.2 28.2 1.0
C E:GLY398 3.0 31.8 1.0
O E:HOH626 3.4 38.3 1.0
OD2 E:ASP195 3.7 47.2 1.0
CA E:GLY398 3.7 32.4 1.0
CB E:ASP195 3.9 43.0 1.0
OD2 E:ASP396 4.0 43.9 1.0
N E:HIS399 4.1 32.9 1.0
OD1 E:ASP396 4.3 42.0 1.0
CG E:ASP195 4.3 43.9 1.0
CA E:HIS399 4.5 34.0 1.0
CG E:ASP396 4.6 43.5 1.0
N E:GLY398 4.8 38.5 1.0

Manganese binding site 8 out of 9 in 7cx7

Go back to Manganese Binding Sites List in 7cx7
Manganese binding site 8 out of 9 in the Crystal Structure of Arabinose Isomerase From Hybrid AI8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Crystal Structure of Arabinose Isomerase From Hybrid AI8 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn504

b:58.0
occ:1.00
 OE1 E:GLU332 2.3 51.0 1.0
NE2 E:HIS448 2.4 49.9 1.0
NE2 E:HIS349 2.4 53.1 1.0
OE1 E:GLU307 2.4 57.1 1.0
O E:HOH644 2.8 27.5 1.0
CD E:GLU307 3.0 57.9 1.0
OE2 E:GLU307 3.1 61.7 1.0
CD E:GLU332 3.1 55.3 1.0
CD2 E:HIS448 3.3 42.0 1.0
CE1 E:HIS349 3.3 59.6 1.0
OE2 E:GLU332 3.3 66.9 1.0
CE1 E:HIS448 3.4 50.3 1.0
CD2 E:HIS349 3.4 56.7 1.0
NE2 E:HIS447 4.0 46.1 1.0
CD2 E:HIS447 4.0 47.5 1.0
CG E:GLU307 4.4 54.5 1.0
ND1 E:HIS349 4.4 59.7 1.0
CG E:HIS448 4.4 45.4 1.0
ND1 E:HIS448 4.5 50.2 1.0
CG E:HIS349 4.5 60.1 1.0
CG E:GLU332 4.5 54.3 1.0
CB E:GLU332 5.0 51.9 1.0

Manganese binding site 9 out of 9 in 7cx7

Go back to Manganese Binding Sites List in 7cx7
Manganese binding site 9 out of 9 in the Crystal Structure of Arabinose Isomerase From Hybrid AI8


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Crystal Structure of Arabinose Isomerase From Hybrid AI8 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mn503

b:53.2
occ:1.00
 OE1 F:GLU332 1.9 51.6 1.0
OE1 F:GLU307 2.2 52.9 1.0
NE2 F:HIS448 2.3 45.7 1.0
NE2 F:HIS349 2.3 47.1 1.0
CD F:GLU332 2.8 53.7 1.0
OE2 F:GLU332 3.1 64.4 1.0
CD F:GLU307 3.1 56.7 1.0
CD2 F:HIS448 3.2 38.6 1.0
CE1 F:HIS349 3.2 49.0 1.0
CD2 F:HIS349 3.3 46.7 1.0
CE1 F:HIS448 3.3 44.7 1.0
OE2 F:GLU307 3.4 71.0 1.0
CD2 F:HIS447 4.0 49.9 1.0
NE2 F:HIS447 4.2 49.0 1.0
CG F:GLU332 4.2 52.0 1.0
CG F:HIS448 4.3 43.0 1.0
ND1 F:HIS349 4.3 49.9 1.0
ND1 F:HIS448 4.4 44.3 1.0
CG F:HIS349 4.4 50.0 1.0
CG F:GLU307 4.5 56.7 1.0
CZ F:PHE330 4.7 55.7 1.0
CB F:GLU332 4.8 51.0 1.0

Reference:

N.K.Q.Hoang, I.Dhanasingh, T.P.Cao, J.Y.Sung, S.M.Shin, D.W.Lee, S.H.Lee. Crystal Structure of Arabinose Isomerase From Hyper Thermophilic Bacterium Thermotoga Maritima (Tmai) Wt To Be Published.
Page generated: Sun Oct 6 08:19:15 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy